View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2312_high_14 (Length: 482)
Name: NF2312_high_14
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_high_14 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 157; Significance: 3e-83; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 281 - 482
Target Start/End: Original strand, 17850653 - 17850850
Alignment:
| Q |
281 |
aatctccccgcatgcatacctgacctccgcgactgataagtccatgttgactgtgcacaaaaagacgaaccacgactctacaaaggtatcactacttatg |
380 |
Q |
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| T |
17850653 |
aatctccgcgcatacgtacctgacctccacgactgataagtccatgttgactgtgcacaaaaagacgcaccacgactctacaagggtatcactacttatg |
17850752 |
T |
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| Q |
381 |
caagcaaggtaataaacagaaacgacagaaaatgatcgatgaaatcggtacttgtattgatttatgaatgaaatagtacaatggatatccttagaacaaa |
480 |
Q |
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| T |
17850753 |
caa----ggtaataaacagaaacgacagaaaatgatcgatgaaatcagtacttgtattgatttatgaatgaaatagtacaatggatatccttagaacaaa |
17850848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 13 - 127
Target Start/End: Original strand, 17850366 - 17850480
Alignment:
| Q |
13 |
aatattctattgaaagaccttaagaagcatcacttgttgataaggatttgaagaagtccaaaagttggaccatatgtgttcacacatttgaaatgtactc |
112 |
Q |
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| T |
17850366 |
aatattctattgaaagaccttaagaagcatcatttgtggataaggatttgaagaagtccaaaagttggaccatatgtgttcacacatttgaaatgtactc |
17850465 |
T |
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| Q |
113 |
caacagagaggtatc |
127 |
Q |
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| T |
17850466 |
caacagagaggtatc |
17850480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 251
Target Start/End: Original strand, 17850487 - 17850526
Alignment:
| Q |
212 |
tttccagcaacaatacatagtaacctcgagtaatgaaacc |
251 |
Q |
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| T |
17850487 |
tttccagcaacaatacatagtaacctcgagtaatgaaacc |
17850526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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