View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2312_high_20 (Length: 424)
Name: NF2312_high_20
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 139 - 411
Target Start/End: Complemental strand, 44425621 - 44425350
Alignment:
| Q |
139 |
taaaaacttttaagctgttattttactcttgaattggatgaagcaagacaaaatttatcaactattccattgccaataaatcttttttgataaaagtgta |
238 |
Q |
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||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44425621 |
taaaaacttttaagctgttattt-agtcttgaattggatgaagcaagacaaaatttatcaactattccattgccaataaatcttttttgataaaagtgta |
44425523 |
T |
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| Q |
239 |
attgtccagattattattacttcagctgcaaaagaaggttttgattgctatgtagatttcaaatatggatatgatgatagggtagaccaatactaattat |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44425522 |
attgtccagattattattacttcagctgcaaaagaaggttttgattgctatgtagatttcaaatatggatatgatgatagggtagaccaatactaattat |
44425423 |
T |
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| Q |
339 |
aagacaaaacttatttacaaagtgaaaaacaagtttgagctcatcattaaaagtcaaatacaaattataagcc |
411 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44425422 |
aagacaaaacttatttaaaaagtgaaaaacaagtttgagctcatcattaaaagtcaaatacaaattataagcc |
44425350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 30 - 143
Target Start/End: Complemental strand, 44426449 - 44426334
Alignment:
| Q |
30 |
atatttaaaagaattcaagttcgatttttaaatgannnnnnn-atcagattttacttttcatctgagcgtcgaactaccaatatctcttttagaaacgaa |
128 |
Q |
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|||||||||||||||||||||| |||||||||||| |||||| ||||||| |||| ||| |||||||||||||||||| |||||||||||||| |
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| T |
44426449 |
atatttaaaagaattcaagttcaatttttaaatgattttttttatcagactttacttctcatttgaacgtcgaactaccaatatcccttttagaaacgaa |
44426350 |
T |
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| Q |
129 |
-ggttaaaaactaaaa |
143 |
Q |
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||||||||| ||||| |
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| T |
44426349 |
cggttaaaaaataaaa |
44426334 |
T |
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