View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2312_high_21 (Length: 424)
Name: NF2312_high_21
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 17 - 406
Target Start/End: Complemental strand, 42265360 - 42264976
Alignment:
| Q |
17 |
atcaaaccaaaacaaattgaagaccaatgtgaaccaaagcgaaaccaccaaaaagaacataaccaaactaatccaagtgaaataggagaaacataacaac |
116 |
Q |
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| T |
42265360 |
atcaaaccaaaacaaattgaagaccaatgtgaaccaaagcgaaaccaccaaaaagaacataaccaaactaatccaagtgaaataggagaaacataacaat |
42265261 |
T |
|
| Q |
117 |
cagagacgaacaaaattaacaagaggcacaagacactcaatcaaagcggatcaaaccatgctcttgataccatgttaaccatctacagtttcaatataat |
216 |
Q |
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||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
42265260 |
cagagacgaacaaaattaacaagagacacgagacactgaatcaaagcggatcaaaccatgctc--------atgttaaccatctacggtttcaatataat |
42265169 |
T |
|
| Q |
217 |
aataaaggagctggctagggtttcataagaatgacaatggcattgcataatattgaata----caagcgaatatcataaccgcagtaacctattatctca |
312 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| | |
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| T |
42265168 |
aataaaggagccggctagggtttcataagaatgacaatggcattgcataatattgaatatatacaagcaaatatcataaccgcagtaacctattatct-a |
42265070 |
T |
|
| Q |
313 |
aacttccccttaaactcatgatccaataacactaggcatcaagagtttgtcaaacaaaaaatcaaagaaaagaaagacaagttgcagtcattaa |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42265069 |
aacttccccttaaactcatgatccaataacactaggcatcaagagtttgtcaaacaaaaaatcaaagaaaagaaagacaagttgcagtcattaa |
42264976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 77 - 158
Target Start/End: Complemental strand, 20361813 - 20361732
Alignment:
| Q |
77 |
aaccaaactaatccaagtgaaataggagaaacataacaaccagagacgaacaaaattaacaagaggcacaagacactcaatc |
158 |
Q |
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| T |
20361813 |
aaccaaactaatccaacacaaatatgagaaacataacaactagagacaaacaaaattgacaagaggcacaagacactcaatc |
20361732 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 195
Target Start/End: Complemental strand, 10740779 - 10740748
Alignment:
| Q |
164 |
ggatcaaaccatgctcttgataccatgttaac |
195 |
Q |
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|||||||||||||||||||||||||||||||| |
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|
| T |
10740779 |
ggatcaaaccatgctcttgataccatgttaac |
10740748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 13166635 - 13166603
Alignment:
| Q |
162 |
gcggatcaaaccatgctcttgataccatgttaa |
194 |
Q |
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||||||||||| ||||||||||||||||||||| |
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| T |
13166635 |
gcggatcaaacgatgctcttgataccatgttaa |
13166603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 195
Target Start/End: Complemental strand, 10414257 - 10414219
Alignment:
| Q |
157 |
tcaaagcggatcaaaccatgctcttgataccatgttaac |
195 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
10414257 |
tcaaaacggatcaaaccatgctcttgataccatgttaac |
10414219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 195
Target Start/End: Complemental strand, 2483701 - 2483666
Alignment:
| Q |
160 |
aagcggatcaaaccatgctcttgataccatgttaac |
195 |
Q |
| |
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||||||||| |||||||||||||||||||||||||| |
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| T |
2483701 |
aagcggatcgaaccatgctcttgataccatgttaac |
2483666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 195
Target Start/End: Complemental strand, 24135130 - 24135092
Alignment:
| Q |
157 |
tcaaagcggatcaaaccatgctcttgataccatgttaac |
195 |
Q |
| |
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|||||||||||||||||| |||||||||||||| ||||| |
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|
| T |
24135130 |
tcaaagcggatcaaaccacgctcttgataccatcttaac |
24135092 |
T |
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