View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2312_high_23 (Length: 415)
Name: NF2312_high_23
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_high_23 |
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Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 37 - 411
Target Start/End: Complemental strand, 17775553 - 17775189
Alignment:
| Q |
37 |
catatagtgatgcttgattgaatatggatatgtaaataaaattttctttgtttaaaatatatccnnnnnnnncaagcataaacaatttaaattaaagtac |
136 |
Q |
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| T |
17775553 |
catatagtgatgcttgattgaatatgcacatgtaaataaaattt-ctctgtttaaaatatatccaaaaaa--caagcataaacaatttaaattagagtac |
17775457 |
T |
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| Q |
137 |
cataaccactgtccaattatacctaagggctaaggcgatgcattaaacctcccttcaaagacgaatccccggtagagtccgtcacctttcccgggtatat |
236 |
Q |
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| T |
17775456 |
cataaccaccgtctaattatacttaagg-------caatgcattaaacctcccttcaaagacgaatccccggtagagtccgtcacctttcccgggtatat |
17775364 |
T |
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| Q |
237 |
tatcaatccaccgccactcatctcccttcgaatcactgcgatcccacaatgccaactttccgatcctcttcgccgggaagaaaaccctatttccaccacc |
336 |
Q |
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| T |
17775363 |
tatcaatccaccgccactcatctcccttcgaatcactgcgatcccacaacgccaactttccgatcctcttcgccgggaagaaaaccctatctccaccacc |
17775264 |
T |
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| Q |
337 |
aaaaaccttaaactcgccggcatcttgaaaataactaaacatctctatcggcatcctcccagcttcatctcactc |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||| |
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| T |
17775263 |
aaaaaccttaaactcgccggcatcttgaaaataactaaacatctctatcggcatcctcccaacttcttcccactc |
17775189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 168 - 411
Target Start/End: Original strand, 12224573 - 12224816
Alignment:
| Q |
168 |
aaggcgatgcattaaacctcccttcaaagacgaatccccggtagagtccgtcacctttcccgggtatattatcaatccaccgccactcatctcccttcga |
267 |
Q |
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||||| |||||| || ||||||||||| || ||||||| |||||||| ||||| || || || | |||||||||||| | |||||||||||||||| |
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| T |
12224573 |
aaggcaatgcatcaagtctcccttcaaacacaaatcccctatagagtccatcaccatttccaggcacattatcaatccaactccactcatctcccttctc |
12224672 |
T |
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| Q |
268 |
atcactgcgatcccacaatgccaactttccgatcctcttcgccgggaagaaaaccctatttccaccaccaaaaaccttaaactcgccggcatcttgaaaa |
367 |
Q |
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|| ||||||||||| |||||||| || | |||||| |||| |||| ||||||||| ||| | ||||| |||||||||| || || || |||||| |
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| T |
12224673 |
tcgaccacgatcccacaacgccaacttcccaaccctctttgccgagaagcaaaccctatcaccagctccaaacaccttaaacttccccgcctcctgaaaa |
12224772 |
T |
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| Q |
368 |
taactaaacatctctatcggcatcctcccagcttcatctcactc |
411 |
Q |
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| T |
12224773 |
cacttaaacatctccaccggcatcctccccgcctcatcccactc |
12224816 |
T |
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