View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2312_high_25 (Length: 403)

Name: NF2312_high_25
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2312_high_25
NF2312_high_25
[»] chr2 (11 HSPs)
chr2 (35-390)||(33026598-33026953)
chr2 (26-386)||(33020258-33020613)
chr2 (188-386)||(33038105-33038300)
chr2 (26-164)||(33038356-33038494)
chr2 (260-331)||(7199958-7200029)
chr2 (262-331)||(7174355-7174424)
chr2 (32-163)||(34570232-34570363)
chr2 (280-331)||(36577366-36577417)
chr2 (263-321)||(34560900-34560958)
chr2 (295-333)||(34570484-34570522)
chr2 (263-331)||(7160737-7160805)
[»] scaffold0044 (1 HSPs)
scaffold0044 (31-371)||(89103-89440)
[»] chr6 (2 HSPs)
chr6 (39-386)||(24417242-24417592)
chr6 (280-328)||(370785-370833)
[»] chr3 (47 HSPs)
chr3 (26-340)||(7942476-7942787)
chr3 (249-375)||(2476590-2476716)
chr3 (44-161)||(43992127-43992244)
chr3 (278-370)||(2456210-2456302)
chr3 (263-344)||(2631344-2631425)
chr3 (278-371)||(7430534-7430627)
chr3 (278-370)||(771497-771589)
chr3 (249-344)||(7324400-7324495)
chr3 (286-376)||(13498179-13498269)
chr3 (269-342)||(43991949-43992022)
chr3 (44-164)||(2456413-2456533)
chr3 (272-344)||(9608336-9608408)
chr3 (280-372)||(37753345-37753437)
chr3 (280-331)||(3754600-3754651)
chr3 (50-164)||(771269-771383)
chr3 (249-375)||(2492038-2492164)
chr3 (249-344)||(2635711-2635803)
chr3 (26-90)||(783572-783636)
chr3 (263-339)||(9561968-9562044)
chr3 (263-375)||(9594607-9594719)
chr3 (280-331)||(4142134-4142185)
chr3 (280-331)||(4157944-4157995)
chr3 (264-375)||(9565813-9565924)
chr3 (278-344)||(754607-754673)
chr3 (26-88)||(1438225-1438287)
chr3 (278-376)||(2644360-2644458)
chr3 (42-84)||(37753116-37753158)
chr3 (262-343)||(783781-783862)
chr3 (286-331)||(803224-803269)
chr3 (278-375)||(2659150-2659247)
chr3 (278-375)||(7334237-7334334)
chr3 (27-76)||(37752754-37752802)
chr3 (286-329)||(997578-997621)
chr3 (286-329)||(1013968-1014011)
chr3 (278-341)||(1437986-1438048)
chr3 (280-331)||(2678399-2678450)
chr3 (280-331)||(2696732-2696783)
chr3 (106-164)||(9561817-9561875)
chr3 (278-344)||(9587183-9587249)
chr3 (286-331)||(968671-968716)
chr3 (288-329)||(2459277-2459318)
chr3 (278-343)||(7427603-7427668)
chr3 (25-90)||(9586930-9586995)
chr3 (45-85)||(956612-956652)
chr3 (279-331)||(1891063-1891115)
chr3 (280-332)||(2442038-2442090)
chr3 (23-63)||(37757485-37757525)
[»] scaffold1004 (2 HSPs)
scaffold1004 (286-388)||(2086-2188)
scaffold1004 (44-88)||(2374-2418)
[»] scaffold0760 (2 HSPs)
scaffold0760 (286-388)||(4581-4683)
scaffold0760 (44-88)||(4869-4913)
[»] chr5 (8 HSPs)
chr5 (286-380)||(20292946-20293040)
chr5 (286-380)||(20301394-20301488)
chr5 (286-380)||(20305807-20305901)
chr5 (286-380)||(20310211-20310305)
chr5 (280-331)||(11081813-11081864)
chr5 (280-331)||(23766862-23766913)
chr5 (280-331)||(23816710-23816761)
chr5 (44-86)||(23644651-23644693)
[»] chr7 (3 HSPs)
chr7 (250-341)||(39298967-39299058)
chr7 (280-327)||(3927063-3927110)
chr7 (280-332)||(1078160-1078212)
[»] chr1 (1 HSPs)
chr1 (290-331)||(23896147-23896188)


Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 35 - 390
Target Start/End: Complemental strand, 33026953 - 33026598
Alignment:
Q  35 tatatcctgacattaagaacaaggtgatatcagactttcaatgtagacttctgggtggatccaaccaccaatgttttgaatcgcaggaatctccaaagta 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  33026953 tatatcctgacattaagaacaaggtgatatcagactttcaatgtagacttctgggtggatccaaccaccaatgttttgaatcgtaggaatctccaaagta 33026854  T
Q  135 ccatctttagaatcgtaaacaaccaacttcgattggtaacattccaactttccaaagtcgatcaacaatttttcatcctcagaaatatataaaacccttg 234  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  33026853 ccatctttggaatcgtaaacaaccaacttcgattggtaacattccaactttccaaagtccatcaacaatatttcatcctcagaaatatataaaacccttg 33026754  T
Q  235 tatagttacacaacaaaccccgattttccatgtgaggaacacagtacaatctagtccaagactttttatttccatattgcttcataacccaaacatccaa 334  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33026753 tatagttacacaacaaaccccgattgtccatgtgaggaacacggtacaatctagtccaagactttttatttccatattgcttcataacccaaacatccaa 33026654  T
Q  335 aaacatatcatttcttacaaagatgcacaagcaatccctcaaaacccacaaagttc 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33026653 aaacatatcatttcttacaaagatgcacaagcaatccctcaaaacccacaaagttc 33026598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 26 - 386
Target Start/End: Complemental strand, 33020613 - 33020258
Alignment:
Q  26 catagcatctatatcctgacattaagaacaaggtgatatcagactttcaatgtagacttctgggtggatc-caaccaccaatgttttgaatcgcaggaat 124  Q
    |||| |||||| ||||| |||||||||||||||||||||   ||||||||||||||||| ||| |  ||| ||||||||||||||||||||| |||||||    
T  33020613 cataccatctacatcctaacattaagaacaaggtgatat---actttcaatgtagacttttggttccatctcaaccaccaatgttttgaatctcaggaat 33020517  T
Q  125 ctccaaagtaccatctttagaatcgtaaacaaccaacttcgattggtaacattccaactttccaaagtcgatcaacaatttttcatcctcagaaatatat 224  Q
    || ||||||||||||||| ||||||||||||||||||||| |||    || ||||||||    |||||| |||| ||||| |||||||||||||||||||    
T  33020516 cttcaaagtaccatctttggaatcgtaaacaaccaacttcaatttaccactttccaactccttaaagtccatcagcaattgttcatcctcagaaatatat 33020417  T
Q  225 aaaacccttgtatagttacacaacaaaccccgattttccatgtgaggaacacagtacaatctagtccaagactttttatttccatattgcttcataaccc 324  Q
    ||| || ||||||||| ||||||   |||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||    
T  33020416 aaagcctttgtatagtgacacaa---accccgatcttccatgtaaggaacacggtacaatctagtccaagactttttatttccatattccttcataatcc 33020320  T
Q  325 aaacatccaaaaacatatcatttcttacaaagatgcacaagcaatccctcaaaacccacaaa 386  Q
    | ||||  |||||||||||| |  || |||||| ||||||||||||||||||||||| ||||    
T  33020319 acacattaaaaaacatatcactatttgcaaagaagcacaagcaatccctcaaaacccccaaa 33020258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 188 - 386
Target Start/End: Complemental strand, 33038300 - 33038105
Alignment:
Q  188 aaagtcgatcaacaatttttcatcctcagaaatatataaaacccttgtatagttacacaacaaaccccgattttccatgtgaggaacacagtacaatcta 287  Q
    |||||| |||| ||||| |||||||||||||||||||||| || ||||||||  ||||||   |||||||| |||||||| |||||||| ||||||||||    
T  33038300 aaagtccatcagcaattgttcatcctcagaaatatataaagcctttgtatagcgacacaa---accccgatcttccatgtaaggaacacggtacaatcta 33038204  T
Q  288 gtccaagactttttatttccatattgcttcataacccaaacatccaaaaacatatcatttcttacaaagatgcacaagcaatccctcaaaacccacaaa 386  Q
    |||||||||||||| |||||||||| |||||||| ||||||||| |||||||||||| | ||| |||||||||||||||||||||||||||||| ||||    
T  33038203 gtccaagactttttgtttccatattccttcataatccaaacatcaaaaaacatatcactacttgcaaagatgcacaagcaatccctcaaaacccccaaa 33038105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 26 - 164
Target Start/End: Complemental strand, 33038494 - 33038356
Alignment:
Q  26 catagcatctatatcctgacattaagaacaaggtgatatcagactttcaatgtagacttctgggtggatccaaccaccaatgttttgaatcgcaggaatc 125  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||    
T  33038494 catagcatctacatcctaacattaagaacaaggtgatatcagactttcaatgtagacttctgggtccatccaaccaccaatgttttgaatctcaggaatc 33038395  T
Q  126 tccaaagtaccatctttagaatcgtaaacaaccaacttc 164  Q
    |||||||||||||| || ||||||||||||| |||||||    
T  33038394 tccaaagtaccatcattggaatcgtaaacaaacaacttc 33038356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 260 - 331
Target Start/End: Original strand, 7199958 - 7200029
Alignment:
Q  260 ttccatgtgaggaacacagtacaatctagtccaagactttttatttccatattgcttcataacccaaacatc 331  Q
    |||||||| |||||||| | ||||||||| |||||| |||| ||||||| | | ||||||||||||||||||    
T  7199958 ttccatgtaaggaacacggaacaatctagcccaagaattttcatttccaaactccttcataacccaaacatc 7200029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 262 - 331
Target Start/End: Original strand, 7174355 - 7174424
Alignment:
Q  262 ccatgtgaggaacacagtacaatctagtccaagactttttatttccatattgcttcataacccaaacatc 331  Q
    |||||| |||||||| | |||||||||||||||| | || ||||||||||| |||||||| ||| |||||    
T  7174355 ccatgtaaggaacacggaacaatctagtccaagaatcttgatttccatattccttcataagccagacatc 7174424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 32 - 163
Target Start/End: Original strand, 34570232 - 34570363
Alignment:
Q  32 atctatatcctgacattaagaacaaggtgatatcagactttcaatgtagacttctgggtggatccaaccaccaatgttttgaatcgcaggaatctccaaa 131  Q
    ||||| ||||| ||||||| || ||||| |||| | ||| |||||||| |||||| |||  ||||||| |   |||||||||||| ||||||||| ||||    
T  34570232 atctacatcctaacattaaaaataaggttatatgaaactctcaatgtatacttctcggtccatccaacaatggatgttttgaatctcaggaatcttcaaa 34570331  T
Q  132 gtaccatctttagaatcgtaaacaaccaactt 163  Q
     ||| || | || || |||||||||| |||||    
T  34570332 atacaatttctaaaaacgtaaacaactaactt 34570363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 280 - 331
Target Start/End: Complemental strand, 36577417 - 36577366
Alignment:
Q  280 acaatctagtccaagactttttatttccatattgcttcataacccaaacatc 331  Q
    ||||| || ||||||||| |||||||||||||| |||||||| |||||||||    
T  36577417 acaatttaatccaagactctttatttccatattccttcataatccaaacatc 36577366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 321
Target Start/End: Original strand, 34560900 - 34560958
Alignment:
Q  263 catgtgaggaacacagtacaatctagtccaagactttttatttccatattgcttcataa 321  Q
    ||||| ||||||||  |||||| |||||||||| ||||||||||||||||  |||||||    
T  34560900 catgttaggaacactatacaatttagtccaagattttttatttccatattctttcataa 34560958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 333
Target Start/End: Original strand, 34570484 - 34570522
Alignment:
Q  295 actttttatttccatattgcttcataacccaaacatcca 333  Q
    |||||||||||||||||| || |||||||||||||||||    
T  34570484 actttttatttccatattcctccataacccaaacatcca 34570522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 331
Target Start/End: Original strand, 7160737 - 7160805
Alignment:
Q  263 catgtgaggaacacagtacaatctagtccaagactttttatttccatattgcttcataacccaaacatc 331  Q
    ||||||||||| || | ||||| |||||||||| |  ||||||||||| | |||||||| |||||||||    
T  7160737 catgtgaggaagacggaacaatttagtccaagaatcattatttccatactccttcataagccaaacatc 7160805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 31 - 371
Target Start/End: Complemental strand, 89440 - 89103
Alignment:
Q  31 catctatatcctgacattaagaacaaggtgatatcagactttcaatgtagacttctgggtggatccaaccaccaatgttttgaatcgcaggaatctccaa 130  Q
    |||||| ||||| || |||||||||||||||||||| ||| ||||||||||||| |||||  |||| || |   |||||||||||| ||||||||| |||    
T  89440 catctacatcctaacgttaagaacaaggtgatatcaaactctcaatgtagacttttgggtccatccgacgattgatgttttgaatcacaggaatcttcaa 89341  T
Q  131 agtaccatctttagaatcgtaaacaaccaacttcgattggtaacattccaactttccaaagtcgatcaacaatttttcatcctcagaaatatataaaacc 230  Q
    |||||||| ||| ||||| ||||||||||| ||| ||| |  || | ||||||    ||| || |||| || ||| |||||||| |||| ||| ||||||    
T  89340 agtaccattttttgaatcataaacaaccaatttcaatttgctacttcccaactcataaaattccatcagcattttgtcatcctcggaaacatacaaaacc 89241  T
Q  231 cttgtatagttacacaacaaaccccgattttccatgtgaggaacacagtacaatctagtccaagactttttatttccatattgcttcataacccaaacat 330  Q
     | ||||||    || ||||||| |||| |||||||| |||||||  ||||||| |||||||||||| |||||||||||||| |||||||||||||| ||    
T  89240 ttggtatagg---acgacaaaccacgatcttccatgtaaggaacattgtacaatttagtccaagactctttatttccatattccttcataacccaaatat 89144  T
Q  331 ccaaaaacatatcatttcttacaaagatgcacaagcaatcc 371  Q
    | ||||| |||||| | |||  |||||||||||||||||||    
T  89143 caaaaaatatatcactacttgtaaagatgcacaagcaatcc 89103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 39 - 386
Target Start/End: Original strand, 24417242 - 24417592
Alignment:
Q  39 tcctgacattaagaacaaggtgatatcagactttcaatgtagacttctggg------tggatccaaccaccaatgttttgaatcgcaggaatctccaaag 132  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||      || |  ||||  |  ||||||  |||| ||||||||| |||      
T  24417242 tcctaacattaagaacaaggtgatatcagactttcaatgtagacttctgggtccagctgcaagcaacgccggatgtttccaatctcaggaatcttcaaga 24417341  T
Q  133 taccatctttagaatcgtaaacaaccaacttcgattggtaacattccaactttccaaagtcgatcaacaatttttcatcctcagaaatatataaaaccct 232  Q
    |||||| ||| |||| |||||||||||||||| ||| ||||| ||||||||    |||| | |||| || || |||||||||| ||||||||||| || |    
T  24417342 taccatttttggaattgtaaacaaccaacttcaatttgtaactttccaactcataaaagccaatcagcagttgttcatcctcaaaaatatataaagcctt 24417441  T
Q  233 tgtatagttacacaacaaaccccgattttccatgtgaggaacacagtacaatctagtccaagactttttatttccatattgcttcataacccaaacatcc 332  Q
    ||||||   ||  |  |   |||| | || ||||||  ||| || ||||||| |||||||||| | ||||||||||||||  ||||||| ||||||||      
T  24417442 tgtataaagacgtatta---cccggtcttgcatgtgtagaatactgtacaatttagtccaagattctttatttccatattctttcataatccaaacattt 24417538  T
Q  333 aaaaacatatcatttcttacaaagatgcacaagcaatccctcaaaacccacaaa 386  Q
    |||||||  |||    ||  || ||||||||| |||||||||||||||| ||||    
T  24417539 aaaaacacgtcaccggttgtaatgatgcacaaacaatccctcaaaacccccaaa 24417592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 328
Target Start/End: Original strand, 370785 - 370833
Alignment:
Q  280 acaatctagtccaagactttttatttccatattgcttcataacccaaac 328  Q
    ||||| |||||||||| | |||||||||||| | |||||||||||||||    
T  370785 acaatttagtccaagaatctttatttccataattcttcataacccaaac 370833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 47)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 26 - 340
Target Start/End: Complemental strand, 7942787 - 7942476
Alignment:
Q  26 catagcatctatatcctgacattaagaacaaggtgatatcagactttcaatgtagacttctgggtggatccaaccaccaatgttttgaatcgcaggaatc 125  Q
    ||||||||| | | ||| ||||||||| ||||||||||||| ||| | |||||||||||| || |  ||||| | |   |||||||||||| || |||||    
T  7942787 catagcatccaaaccctaacattaagagcaaggtgatatcaaactcttaatgtagacttcaggattcatccatctattgatgttttgaatctcatgaatc 7942688  T
Q  126 tccaaagtaccatctttagaatcgtaaacaaccaacttcgattggtaacattccaactttccaaagtcgatcaacaatttttcatcctcagaaatatata 225  Q
    | ||||||| | | ||| ||||||||||||||||||||| ||  || || | | | ||    ||| || || | || ||| ||||| |||||||||||||    
T  7942687 ttcaaagtatcgtttttggaatcgtaaacaaccaacttcaatatgttacttcctacctcataaaaatccattagcagtttctcatcatcagaaatatata 7942588  T
Q  226 aaacccttgtatagttacacaacaaaccccgattttccatgtgaggaacacagtacaatctagtccaagactttttatttccatattgcttcataaccca 325  Q
    || |  ||||||||  ||||||   ||| |||| |||||||| |||||||  ||||||| || ||||||||| |||||| ||||| | |||||||| |||    
T  7942587 aagcttttgtataggcacacaa---acctcgatcttccatgtaaggaacattgtacaatttaatccaagactctttattaccatactccttcataatcca 7942491  T
Q  326 aacatccaaaaacat 340  Q
    ||||||||| |||||    
T  7942490 aacatccaataacat 7942476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 249 - 375
Target Start/End: Complemental strand, 2476716 - 2476590
Alignment:
Q  249 aaaccccgattttccatgtgaggaacacagtacaatctagtccaagactttttatttccatattgcttcataacccaaacatccaaaaacatatcatttc 348  Q
    |||||||||| || ||||| |||||||  ||||||| |||||||||||| |||||||||||| || ||||||| ||||||||||| |||||||||| |      
T  2476716 aaaccccgatcttgcatgttaggaacagtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcactag 2476617  T
Q  349 ttacaaagatgcacaagcaatccctca 375  Q
     | || |||| ||||||||||||||||    
T  2476616 ctgcagagatacacaagcaatccctca 2476590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 44 - 161
Target Start/End: Complemental strand, 43992244 - 43992127
Alignment:
Q  44 acattaagaacaaggtgatatcagactttcaatgtagacttctgggtggatccaaccaccaatgttttgaatcgcaggaatctccaaagtaccatcttta 143  Q
    ||||||||||||||||||||||| ||| |||| ||| ||||| ||||  |||||||||    ||||||||||| ||||||||| || |||||||| |||     
T  43992244 acattaagaacaaggtgatatcaaactctcaacgtaaacttcagggtctatccaaccattggtgttttgaatctcaggaatcttcagagtaccatttttg 43992145  T
Q  144 gaatcgtaaacaaccaac 161  Q
    |||||||||||| |||||    
T  43992144 gaatcgtaaacagccaac 43992127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 278 - 370
Target Start/End: Complemental strand, 2456302 - 2456210
Alignment:
Q  278 gtacaatctagtccaagactttttatttccatattgcttcataacccaaacatccaaaaacatatcatttcttacaaagatgcacaagcaatc 370  Q
    ||||||| |||||||||| | |||||||||||||| ||||||||||||||||||| |||||||||||    || |||| ||||||||||||||    
T  2456302 gtacaatttagtccaagagtctttatttccatattccttcataacccaaacatcccaaaacatatcacaatttgcaaaaatgcacaagcaatc 2456210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 263 - 344
Target Start/End: Complemental strand, 2631425 - 2631344
Alignment:
Q  263 catgtgaggaacacagtacaatctagtccaagactttttatttccatattgcttcataacccaaacatccaaaaacatatca 344  Q
    ||||| |||||||| | ||||| |||||||||||| || ||||||||||| |||||||| |||||||| |||||||||||||    
T  2631425 catgtcaggaacactgcacaatttagtccaagactcttgatttccatattccttcataatccaaacattcaaaaacatatca 2631344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 278 - 371
Target Start/End: Original strand, 7430534 - 7430627
Alignment:
Q  278 gtacaatctagtccaagactttttatttccatattgcttcataacccaaacatccaaaaacatatcatttcttacaaagatgcacaagcaatcc 371  Q
    ||||||| ||||| ||||||||||||||||||| | |||||||| ||||||||||||||||  || |   ||| ||||||||||||||||||||    
T  7430534 gtacaatttagtctaagactttttatttccatacttcttcataatccaaacatccaaaaacccatgacaacttgcaaagatgcacaagcaatcc 7430627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 278 - 370
Target Start/End: Original strand, 771497 - 771589
Alignment:
Q  278 gtacaatctagtccaagactttttatttccatattgcttcataacccaaacatccaaaaacatatcatttcttacaaagatgcacaagcaatc 370  Q
    ||||||| |||||||||| | | |||||||||||| ||||||||||||||||||| |||||||||||    || |||| ||||||||||||||    
T  771497 gtacaatttagtccaagagtctgtatttccatattccttcataacccaaacatcccaaaacatatcacaatttgcaaaaatgcacaagcaatc 771589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 249 - 344
Target Start/End: Original strand, 7324400 - 7324495
Alignment:
Q  249 aaaccccgattttccatgtgaggaacacagtacaatctagtccaagactttttatttccatattgcttcataacccaaacatccaaaaacatatca 344  Q
    ||||| |||| || ||||| ||||||||  |||||| |||||||||||| ||||||||| || | |||||||| ||||||||||||| ||||||||    
T  7324400 aaaccgcgatcttgcatgttaggaacactatacaatttagtccaagactctttatttccgtagtccttcataatccaaacatccaaagacatatca 7324495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 286 - 376
Target Start/End: Complemental strand, 13498269 - 13498179
Alignment:
Q  286 tagtccaagactttttatttccatattgcttcataacccaaacatccaaaaacatatcatttcttacaaagatgcacaagcaatccctcaa 376  Q
    |||||||||||| |||||||||||||| |||||||| ||||||||||| ||| ||||||||   |  ||| ||||||||||||||| ||||    
T  13498269 tagtccaagactctttatttccatattccttcataatccaaacatccacaaagatatcattatgtgaaaatatgcacaagcaatccttcaa 13498179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 269 - 342
Target Start/End: Complemental strand, 43992022 - 43991949
Alignment:
Q  269 aggaacacagtacaatctagtccaagactttttatttccatattgcttcataacccaaacatccaaaaacatat 342  Q
    ||||||||  |||||| | |||||||||| | |||||||||||| |||||||| ||||||||||||||||||||    
T  43992022 aggaacactatacaatttggtccaagactctatatttccatattccttcataatccaaacatccaaaaacatat 43991949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 44 - 164
Target Start/End: Complemental strand, 2456533 - 2456413
Alignment:
Q  44 acattaagaacaaggtgatatcagactttcaatgtagacttctgggtggatccaaccaccaatgttttgaatcgcaggaatctccaaagtaccatcttta 143  Q
    ||||| ||||||||||||||| | ||| |||||||||||||||||||  ||| ||  | | ||||||||||||  ||||| || ||||||||||  |||     
T  2456533 acatttagaacaaggtgatataacactctcaatgtagacttctgggtccatcaaataatcgatgttttgaatcttaggaaacttcaaagtaccacttttg 2456434  T
Q  144 gaatcgtaaacaaccaacttc 164  Q
    |||| ||||||||| ||||||    
T  2456433 gaattgtaaacaactaacttc 2456413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 272 - 344
Target Start/End: Original strand, 9608336 - 9608408
Alignment:
Q  272 aacacagtacaatctagtccaagactttttatttccatattgcttcataacccaaacatccaaaaacatatca 344  Q
    ||||| ||| ||| |||||||||| | | |||||||||||| |||||||||||||||||| ||||||||||||    
T  9608336 aacactgtataatttagtccaagaatctatatttccatattccttcataacccaaacatcaaaaaacatatca 9608408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 280 - 372
Target Start/End: Original strand, 37753345 - 37753437
Alignment:
Q  280 acaatctagtccaagactttttatttccatattgcttcataacccaaacatccaaaaacatatcatttcttacaaagatgcacaagcaatccc 372  Q
    ||||| |||||||||||| ||| |||||||||| || ||||| ||||||||||| |||||  ||||| ||| |||||||||||| | ||||||    
T  37753345 acaatttagtccaagactctttctttccatattcctccataatccaaacatccataaacaattcattacttgcaaagatgcacaggtaatccc 37753437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 331
Target Start/End: Complemental strand, 3754651 - 3754600
Alignment:
Q  280 acaatctagtccaagactttttatttccatattgcttcataacccaaacatc 331  Q
    ||||| |||||||||||| |||||||||||||| ||||||||||||||||||    
T  3754651 acaatttagtccaagactctttatttccatattccttcataacccaaacatc 3754600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 164
Target Start/End: Original strand, 771269 - 771383
Alignment:
Q  50 agaacaaggtgatatcagactttcaatgtagacttctgggtggatccaaccaccaatgttttgaatcgcaggaatctccaaagtaccatctttagaatcg 149  Q
    ||||||||||||||||| ||| || ||||||||||||||||  ||| ||  | | ||||||||||||  ||||| || ||||||||||  ||| |||| |    
T  771269 agaacaaggtgatatcaaactctctatgtagacttctgggtccatcaaataatcgatgttttgaatcttaggaaacttcaaagtaccacttttggaattg 771368  T
Q  150 taaacaaccaacttc 164  Q
    |||||||| ||||||    
T  771369 taaacaactaacttc 771383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 249 - 375
Target Start/End: Complemental strand, 2492164 - 2492038
Alignment:
Q  249 aaaccccgattttccatgtgaggaacacagtacaatctagtccaagactttttatttccatattgcttcataacccaaacatccaaaaacatatcatttc 348  Q
    |||||||||| || ||||| ||||||||  |||||| |||||||||||| |  ||||||||| | |||||||| |||||||| ||||| | ||||| |      
T  2492164 aaaccccgatcttgcatgttaggaacactatacaatttagtccaagactctcgatttccatactccttcataatccaaacattcaaaatcctatcaatag 2492065  T
Q  349 ttacaaagatgcacaagcaatccctca 375  Q
    || |||| |  ||||||||||||||||    
T  2492064 ttgcaaaaacacacaagcaatccctca 2492038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 344
Target Start/End: Complemental strand, 2635803 - 2635711
Alignment:
Q  249 aaaccccgattttccatgtgaggaacacagtacaatctagtccaagactttttatttccatattgcttcataacccaaacatccaaaaacatatca 344  Q
    |||||||||| || ||||| |||||||| ||||||| |||||||||||| || | |||||||   || ||||| ||||||||||||||||| ||||    
T  2635803 aaaccccgatgttgcatgttaggaacactgtacaatttagtccaagactcttcacttccata---ctccataatccaaacatccaaaaacacatca 2635711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 783572 - 783636
Alignment:
Q  26 catagcatctatatcctgacattaagaacaaggtgatatcagactttcaatgtagacttctgggt 90  Q
    ||||||||| | ||| ||||||||||||||||||||||||| ||| |||| ||||||||| ||||    
T  783572 catagcatcaacatcttgacattaagaacaaggtgatatcaaactctcaacgtagacttccgggt 783636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 263 - 339
Target Start/End: Original strand, 9561968 - 9562044
Alignment:
Q  263 catgtgaggaacacagtacaatctagtccaagactttttatttccatattgcttcataacccaaacatccaaaaaca 339  Q
    ||||| |||||||| ||| ||| |||||||||||| || ||||||||| |  ||||||| |||||||||||||||||    
T  9561968 catgttaggaacactgtataatttagtccaagactcttgatttccatactcattcataatccaaacatccaaaaaca 9562044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 263 - 375
Target Start/End: Original strand, 9594607 - 9594719
Alignment:
Q  263 catgtgaggaacacagtacaatctagtccaagactttttatttccatattgcttcataacccaaacatccaaaaacatatcatttcttacaaagatgcac 362  Q
    ||||| |||||||  | ||||| |||||||||||| || |||||| || |  ||||||| |||||||| ||||||||||||| |  || ||||||  |||    
T  9594607 catgttaggaacatggaacaatttagtccaagactcttcatttccgtacttattcataatccaaacattcaaaaacatatcactagtttcaaagacacac 9594706  T
Q  363 aagcaatccctca 375  Q
    |||||||||||||    
T  9594707 aagcaatccctca 9594719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 331
Target Start/End: Original strand, 4142134 - 4142185
Alignment:
Q  280 acaatctagtccaagactttttatttccatattgcttcataacccaaacatc 331  Q
    ||||| |||||||||||| |||||||||||||| |||||||| |||||||||    
T  4142134 acaatttagtccaagactctttatttccatattccttcataagccaaacatc 4142185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 331
Target Start/End: Original strand, 4157944 - 4157995
Alignment:
Q  280 acaatctagtccaagactttttatttccatattgcttcataacccaaacatc 331  Q
    ||||| |||||||||||| |||||||||||||| |||||||| |||||||||    
T  4157944 acaatttagtccaagactctttatttccatattccttcataagccaaacatc 4157995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 264 - 375
Target Start/End: Original strand, 9565813 - 9565924
Alignment:
Q  264 atgtgaggaacacagtacaatctagtccaagactttttatttccatattgcttcataacccaaacatccaaaaacatatcatttcttacaaagatgcaca 363  Q
    |||| |||||||  ||||||| |||||||||||| || || ||| || | |||||||| ||||||||||| | |||||||| | ||| ||||||  ||||    
T  9565813 atgttaggaacaatgtacaatttagtccaagactcttgatctccgtactccttcataatccaaacatccatatacatatcactacttgcaaagacacaca 9565912  T
Q  364 agcaatccctca 375  Q
    ||||| ||||||    
T  9565913 agcaacccctca 9565924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 344
Target Start/End: Original strand, 754607 - 754673
Alignment:
Q  278 gtacaatctagtccaagactttttatttccatattgcttcataacccaaacatccaaaaacatatca 344  Q
    ||||||| |||||||||||| || || |||||| | |||||||| ||||||||||| ||||||||||    
T  754607 gtacaatttagtccaagactcttgatctccatactccttcataatccaaacatccataaacatatca 754673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 1438287 - 1438225
Alignment:
Q  26 catagcatctatatcctgacattaagaacaaggtgatatcagactttcaatgtagacttctgg 88  Q
    ||||||||| | ||| ||||||||| ||||||||||||||| ||| |||| ||||||||||||    
T  1438287 catagcatcaacatcttgacattaaaaacaaggtgatatcaaactctcaacgtagacttctgg 1438225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 376
Target Start/End: Original strand, 2644360 - 2644458
Alignment:
Q  278 gtacaatctagtccaagactttttatttccatattgcttcataacccaaacatccaaaaacatatcatttcttacaaagatgcacaagcaatccctcaa 376  Q
    ||||||| |||||||||||| || ||||||||| | |||||||| ||||||||||||| |   |||| |  || ||||||  |||||||||||||||||    
T  2644360 gtacaatttagtccaagactcttgatttccatactccttcataatccaaacatccaaatattcatcactagttgcaaagacacacaagcaatccctcaa 2644458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 84
Target Start/End: Original strand, 37753116 - 37753158
Alignment:
Q  42 tgacattaagaacaaggtgatatcagactttcaatgtagactt 84  Q
    ||||||||||||||||||||||||||||| ||| |||||||||    
T  37753116 tgacattaagaacaaggtgatatcagactctcagtgtagactt 37753158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 262 - 343
Target Start/End: Original strand, 783781 - 783862
Alignment:
Q  262 ccatgtgaggaacacagtacaatctagtccaagactttttatttccatattgcttcataacccaaacatccaaaaacatatc 343  Q
    |||||| |||||||   |||||| ||||||| | |||| |||||||||||| |||||||| ||||||||||| || ||||||    
T  783781 ccatgtaaggaacagtatacaatttagtccatggctttgtatttccatattccttcataatccaaacatccacaagcatatc 783862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 286 - 331
Target Start/End: Original strand, 803224 - 803269
Alignment:
Q  286 tagtccaagactttttatttccatattgcttcataacccaaacatc 331  Q
    |||||||||||| ||||||||||||||  |||||||||||||||||    
T  803224 tagtccaagactctttatttccatattctttcataacccaaacatc 803269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 278 - 375
Target Start/End: Original strand, 2659150 - 2659247
Alignment:
Q  278 gtacaatctagtccaagactttttatttccatattgcttcataacccaaacatccaaaaacatatcatttcttacaaagatgcacaagcaatccctca 375  Q
    ||||||| |||||||||||| || ||||||||| | |||||||| |||||||||| || |   |||| | ||| ||||||  ||||||||||||||||    
T  2659150 gtacaatttagtccaagactcttgatttccatactccttcataatccaaacatcccaatattcatcactacttgcaaagacacacaagcaatccctca 2659247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 278 - 375
Target Start/End: Original strand, 7334237 - 7334334
Alignment:
Q  278 gtacaatctagtccaagactttttatttccatattgcttcataacccaaacatccaaaaacatatcatttcttacaaagatgcacaagcaatccctca 375  Q
    ||||||| |||||||||||| ||||||||| || | |||||| | |||||||||| || | |||||| | ||  ||||||  ||||||||||||||||    
T  7334237 gtacaatttagtccaagactctttatttccgtagtccttcatgatccaaacatcccaatatatatcactactggcaaagacacacaagcaatccctca 7334334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 37752754 - 37752802
Alignment:
Q  27 atagcatctatatcctgacattaagaacaaggtgatatcagactttcaat 76  Q
    |||||||||||||| | ||||||||||||| |||||||||||||||||||    
T  37752754 atagcatctatatcttaacattaagaacaa-gtgatatcagactttcaat 37752802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 286 - 329
Target Start/End: Complemental strand, 997621 - 997578
Alignment:
Q  286 tagtccaagactttttatttccatattgcttcataacccaaaca 329  Q
    |||||||||||| |||||||||||||| |||||| |||||||||    
T  997621 tagtccaagactctttatttccatattccttcattacccaaaca 997578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 286 - 329
Target Start/End: Complemental strand, 1014011 - 1013968
Alignment:
Q  286 tagtccaagactttttatttccatattgcttcataacccaaaca 329  Q
    |||||||||||| |||||||||||||| |||||| |||||||||    
T  1014011 tagtccaagactctttatttccatattccttcattacccaaaca 1013968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 278 - 341
Target Start/End: Complemental strand, 1438048 - 1437986
Alignment:
Q  278 gtacaatctagtccaagactttttatttccatattgcttcataacccaaacatccaaaaacata 341  Q
    ||||||| || ||||||| | |||||||||||||| |||||||| ||||||||||| |||||||    
T  1438048 gtacaatttaatccaagagtctttatttccatattccttcataa-ccaaacatccagaaacata 1437986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 280 - 331
Target Start/End: Original strand, 2678399 - 2678450
Alignment:
Q  280 acaatctagtccaagactttttatttccatattgcttcataacccaaacatc 331  Q
    ||||| ||||||| |||| ||| ||||||||||| |||||||||||||||||    
T  2678399 acaatttagtccatgactctttttttccatattgtttcataacccaaacatc 2678450  T

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Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 280 - 331
Target Start/End: Original strand, 2696732 - 2696783
Alignment:
Q  280 acaatctagtccaagactttttatttccatattgcttcataacccaaacatc 331  Q
    ||||| || ||||||||| |||||||||||||| |||||||| |||||||||    
T  2696732 acaatttaatccaagactctttatttccatattccttcataatccaaacatc 2696783  T

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Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 164
Target Start/End: Original strand, 9561817 - 9561875
Alignment:
Q  106 tgttttgaatcgcaggaatctccaaagtaccatctttagaatcgtaaacaaccaacttc 164  Q
    ||||||||| | ||||||| | ||||||||||   ||||||||||||||||||||||||    
T  9561817 tgttttgaaactcaggaatattcaaagtaccagtcttagaatcgtaaacaaccaacttc 9561875  T

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Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 344
Target Start/End: Original strand, 9587183 - 9587249
Alignment:
Q  278 gtacaatctagtccaagactttttatttccatattgcttcataacccaaacatccaaaaacatatca 344  Q
    ||||||| | ||||||| || |||||||||||||| |||||||| |||||| |||| || |||||||    
T  9587183 gtacaattttgtccaaggctctttatttccatattccttcataatccaaacctccacaagcatatca 9587249  T

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Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 331
Target Start/End: Complemental strand, 968716 - 968671
Alignment:
Q  286 tagtccaagactttttatttccatattgcttcataacccaaacatc 331  Q
    ||||||| |||| ||||||||||| || ||||||||||||||||||    
T  968716 tagtccatgactctttatttccatgttccttcataacccaaacatc 968671  T

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Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 329
Target Start/End: Complemental strand, 2459318 - 2459277
Alignment:
Q  288 gtccaagactttttatttccatattgcttcataacccaaaca 329  Q
    |||||||||| |||||||||||||| |||||||| |||||||    
T  2459318 gtccaagactctttatttccatattccttcataatccaaaca 2459277  T

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Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 343
Target Start/End: Original strand, 7427603 - 7427668
Alignment:
Q  278 gtacaatctagtccaagactttttatttccatattgcttcataacccaaacatccaaaaacatatc 343  Q
    ||||||| ||| ||| |||| |||||||||||||| | |||||||||| | | |||||||||||||    
T  7427603 gtacaatttagcccacgactctttatttccatattccatcataacccatatacccaaaaacatatc 7427668  T

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Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 9586930 - 9586995
Alignment:
Q  25 acatagcatctatatcctgacattaagaacaaggtgatatcagactttcaatgtagacttctgggt 90  Q
    |||||||||| | | | |||||| ||||| |||||||||||| ||| |||||||||||||| ||||    
T  9586930 acatagcatcaacaacttgacatcaagaataaggtgatatcaaactctcaatgtagacttccgggt 9586995  T

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Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 956652 - 956612
Alignment:
Q  45 cattaagaacaaggtgatatcagactttcaatgtagacttc 85  Q
    |||||||||||||||||||||| |||||||| | |||||||    
T  956652 cattaagaacaaggtgatatcaaactttcaaagcagacttc 956612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 331
Target Start/End: Original strand, 1891063 - 1891115
Alignment:
Q  279 tacaatctagtccaagactttttatttccatattgcttcataacccaaacatc 331  Q
    |||||| |||||||||| | ||||||||||| || |||||||| |||||||||    
T  1891063 tacaatttagtccaagagtctttatttccatgttccttcataatccaaacatc 1891115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 332
Target Start/End: Complemental strand, 2442090 - 2442038
Alignment:
Q  280 acaatctagtccaagactttttatttccatattgcttcataacccaaacatcc 332  Q
    ||||| |||||||||| | |||||||||||| | |||||||| ||||||||||    
T  2442090 acaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 2442038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 37757485 - 37757525
Alignment:
Q  23 tgacatagcatctatatcctgacattaagaacaaggtgata 63  Q
    |||||||||||||| | | ||||||||||||||||||||||    
T  37757485 tgacatagcatctacaccttgacattaagaacaaggtgata 37757525  T

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Target: scaffold1004 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold1004
Description:

Target: scaffold1004; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 286 - 388
Target Start/End: Complemental strand, 2188 - 2086
Alignment:
Q  286 tagtccaagactttttatttccatattgcttcataacccaaacatccaaaaacatatcatttcttacaaagatgcacaagcaatccctcaaaacccacaa 385  Q
    |||||||||||| |  ||||||||||| ||||||| ||||||||| |||||||| |||||| ||| |||||||||||||||||||| | ||||||| |||    
T  2188 tagtccaagactctacatttccatattccttcatagcccaaacattcaaaaacacatcattacttgcaaagatgcacaagcaatcctttaaaacccccaa 2089  T
Q  386 agt 388  Q
    |||    
T  2088 agt 2086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1004; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 2418 - 2374
Alignment:
Q  44 acattaagaacaaggtgatatcagactttcaatgtagacttctgg 88  Q
    ||||||| ||||||||||||| ||||| |||||||||||||||||    
T  2418 acattaaaaacaaggtgatattagactctcaatgtagacttctgg 2374  T

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Target: scaffold0760 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 286 - 388
Target Start/End: Complemental strand, 4683 - 4581
Alignment:
Q  286 tagtccaagactttttatttccatattgcttcataacccaaacatccaaaaacatatcatttcttacaaagatgcacaagcaatccctcaaaacccacaa 385  Q
    |||||||||||| |  ||||||||||| ||||||| ||||||||| |||||||| |||||| ||| |||||||||||||||||||| | ||||||| |||    
T  4683 tagtccaagactctacatttccatattccttcatagcccaaacattcaaaaacacatcattacttgcaaagatgcacaagcaatcctttaaaacccccaa 4584  T
Q  386 agt 388  Q
    |||    
T  4583 agt 4581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0760; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 4913 - 4869
Alignment:
Q  44 acattaagaacaaggtgatatcagactttcaatgtagacttctgg 88  Q
    ||||||| ||||||||||||| ||||| |||||||||||||||||    
T  4913 acattaaaaacaaggtgatattagactctcaatgtagacttctgg 4869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 286 - 380
Target Start/End: Complemental strand, 20293040 - 20292946
Alignment:
Q  286 tagtccaagactttttatttccatattgcttcataacccaaacatccaaaaacatatcatttcttacaaagatgcacaagcaatccctcaaaacc 380  Q
    |||||||||||| |||| ||||||||| |||||||| |||||||||||||  || |||| |  ||||| ||||||||||||||||||||||||||    
T  20293040 tagtccaagactctttaattccatattccttcataatccaaacatccaaatccagatcactagttacatagatgcacaagcaatccctcaaaacc 20292946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 286 - 380
Target Start/End: Complemental strand, 20301488 - 20301394
Alignment:
Q  286 tagtccaagactttttatttccatattgcttcataacccaaacatccaaaaacatatcatttcttacaaagatgcacaagcaatccctcaaaacc 380  Q
    |||||||||||| |||| || |||||| |||||||| |||||||||||||  || |||| |  ||||| ||||||||||||||||||||||||||    
T  20301488 tagtccaagactctttaattgcatattccttcataatccaaacatccaaatccagatcactagttacatagatgcacaagcaatccctcaaaacc 20301394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 286 - 380
Target Start/End: Complemental strand, 20305901 - 20305807
Alignment:
Q  286 tagtccaagactttttatttccatattgcttcataacccaaacatccaaaaacatatcatttcttacaaagatgcacaagcaatccctcaaaacc 380  Q
    |||||||||||| |||| ||||||||| |||||||| ||| |||||||||  || |||| |  ||||| ||||||||||||||||||||||||||    
T  20305901 tagtccaagactctttaattccatattccttcataatccagacatccaaatccagatcactagttacatagatgcacaagcaatccctcaaaacc 20305807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 286 - 380
Target Start/End: Complemental strand, 20310305 - 20310211
Alignment:
Q  286 tagtccaagactttttatttccatattgcttcataacccaaacatccaaaaacatatcatttcttacaaagatgcacaagcaatccctcaaaacc 380  Q
    |||||||||||| |||| ||||||||| |||||||| ||| |||||||||  || |||| |  ||||| ||||||||||||||||||||||||||    
T  20310305 tagtccaagactctttaattccatattccttcataatccagacatccaaatccagatcactagttacatagatgcacaagcaatccctcaaaacc 20310211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 331
Target Start/End: Complemental strand, 11081864 - 11081813
Alignment:
Q  280 acaatctagtccaagactttttatttccatattgcttcataacccaaacatc 331  Q
    ||||| |||||||||||| |||||||||||| | ||||||||||||||||||    
T  11081864 acaatttagtccaagactctttatttccatactccttcataacccaaacatc 11081813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 280 - 331
Target Start/End: Original strand, 23766862 - 23766913
Alignment:
Q  280 acaatctagtccaagactttttatttccatattgcttcataacccaaacatc 331  Q
    ||||| |||||||||||| ||||||||||||||  ||||||| |||||||||    
T  23766862 acaatttagtccaagactctttatttccatattctttcataatccaaacatc 23766913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 280 - 331
Target Start/End: Original strand, 23816710 - 23816761
Alignment:
Q  280 acaatctagtccaagactttttatttccatattgcttcataacccaaacatc 331  Q
    ||||| |||||||||||| ||||||||||||||  ||||||| |||||||||    
T  23816710 acaatttagtccaagactctttatttccatattctttcataatccaaacatc 23816761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 23644693 - 23644651
Alignment:
Q  44 acattaagaacaaggtgatatcagactttcaatgtagacttct 86  Q
    ||||||||||||||||||||||| |||||||| | ||||||||    
T  23644693 acattaagaacaaggtgatatcaaactttcaacgcagacttct 23644651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 250 - 341
Target Start/End: Complemental strand, 39299058 - 39298967
Alignment:
Q  250 aaccccgattttccatgtgaggaacacagtacaatctagtccaagactttttatttccatattgcttcataacccaaacatccaaaaacata 341  Q
    ||||| ||| |||||||| |||||||| ||| ||| ||||||| |||| |||||||||| ||| ||||| |||||||||||| |||||||||    
T  39299058 aaccctgatcttccatgtaaggaacactgtaaaatttagtccaggactctttatttccacattccttcaaaacccaaacatcaaaaaacata 39298967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 280 - 327
Target Start/End: Complemental strand, 3927110 - 3927063
Alignment:
Q  280 acaatctagtccaagactttttatttccatattgcttcataacccaaa 327  Q
    ||||| |||||||||| |||||||||||||| | ||||||||||||||    
T  3927110 acaatttagtccaagaatttttatttccataatccttcataacccaaa 3927063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 332
Target Start/End: Original strand, 1078160 - 1078212
Alignment:
Q  280 acaatctagtccaagactttttatttccatattgcttcataacccaaacatcc 332  Q
    ||||| ||||||| |||| | |||||||||| | |||||||||||||||||||    
T  1078160 acaatttagtccacgactctctatttccatactccttcataacccaaacatcc 1078212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 331
Target Start/End: Original strand, 23896147 - 23896188
Alignment:
Q  290 ccaagactttttatttccatattgcttcataacccaaacatc 331  Q
    |||||||| |||||||||||||| |||||||| |||||||||    
T  23896147 ccaagactctttatttccatattccttcataagccaaacatc 23896188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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