View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2312_high_27 (Length: 396)
Name: NF2312_high_27
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 105 - 384
Target Start/End: Complemental strand, 11069272 - 11068994
Alignment:
| Q |
105 |
tccaatgcatgaatcaaaagattctgtaatattatatcataaattattatataaagtcttagactttatatatcttagtttgatctttgtgcaatgacaa |
204 |
Q |
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| T |
11069272 |
tccaatgcatgaatcaaacgactctataatattatatcataaattattatattaagtcttagactttatatatcttagtttgatttttgtgcaatgacaa |
11069173 |
T |
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| Q |
205 |
aatgtggtgtaatatatgtggttattatgtaatttataataatgacagctctgtaattgatcgtattcaataagattgaagttagtaattcgtgcttgca |
304 |
Q |
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| T |
11069172 |
aatgcggtgtaatatatgtggttattatgtaatttata-taatgacacctctgtaattgatcgtattcaataagattgaagttagtaattcgtgcttgca |
11069074 |
T |
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| Q |
305 |
gaaatatttattctttattattttaggtttggtattgttgtgtgtttaggttagcttcattcaacatattgattcatttt |
384 |
Q |
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| T |
11069073 |
gaaatatttattctttattattctaggtttgatattgttgtgtgtttaagttagcttcattcaacatattgattcatttt |
11068994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 11069326 - 11069273
Alignment:
| Q |
18 |
ccaggttgcaaaggtctattaggggcacaaatgtaaattgttgccctttcaata |
71 |
Q |
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| T |
11069326 |
ccaggttgcaaaggtctattaggggcacaaatgtaaattgttgccctttcaata |
11069273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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