View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2312_high_28 (Length: 383)
Name: NF2312_high_28
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 29411180 - 29410819
Alignment:
| Q |
1 |
tcaacatcaaggttatggatttgttgaattccgcagcgaagaagatgctgactatgtatgtttctttcttttactactcttcccctattatannnnnnna |
100 |
Q |
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| T |
29411180 |
tcaacatcaaggttatggatttgttgaattccgcagcgaagaagatgctgactatgtatgtttctttcttttactactcttcccctattatttatcaaat |
29411081 |
T |
|
| Q |
101 |
tttgccctaattgcttcttctattgcaggctattaaagtacttaacatgattaaactttatgggaaaccaattcgtgtaaataaggtacttttttccatt |
200 |
Q |
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| T |
29411080 |
ttaaacctaattgcttcttctattgcaggctattaaagtacttaacatgattaaactttatgggaaaccaattcgtgtaaataaggtacttttttccatt |
29410981 |
T |
|
| Q |
201 |
cctacttacttgtgagactgtttcagagagcctatggaaatagattataatgtcaataagcacttcatgattgccgataatctccattactatttctcct |
300 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29410980 |
cctacttacttgtgagactgtttgagagagcctatggaaatagattataatgtcaataagcacttcatgattgccgataatctccattactatttctcct |
29410881 |
T |
|
| Q |
301 |
tggagggaaccggagttcttgtatctgggaataaatcttagagattcttagatgggattatc |
362 |
Q |
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| T |
29410880 |
tggagggaaccggagttcttgtatctgggaataaatcttagagattcttagatgggattatc |
29410819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 248
Target Start/End: Complemental strand, 42530370 - 42530330
Alignment:
| Q |
208 |
acttgtgagactgtttcagagagcctatggaaatagattat |
248 |
Q |
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| T |
42530370 |
acttgtgagactgtttcagaaagcttatggaaatagcttat |
42530330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 21130723 - 21130687
Alignment:
| Q |
207 |
tacttgtgagactgtttcagagagcctatggaaatag |
243 |
Q |
| |
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||||||||||||||||| ||||||| ||||||||||| |
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| T |
21130723 |
tacttgtgagactgtttgagagagcttatggaaatag |
21130687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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