View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2312_high_34 (Length: 365)
Name: NF2312_high_34
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_high_34 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 86 - 279
Target Start/End: Complemental strand, 42679501 - 42679306
Alignment:
| Q |
86 |
acatttgatcaagggacgctatatagtcggtggctgtacatattcctgaagcagaaaatatcgcgtgttactatcccgatata--aattcataaagatgt |
183 |
Q |
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| T |
42679501 |
acatttgatcaagggacgctatatagtcggtggctgtacatattcctgaagcagaaaatatcgcgtgttactatcccgatatataaattcataaagatgt |
42679402 |
T |
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| Q |
184 |
gttcaagacctattggtgttgctggacatattattcctaggaatttcccatcactaacgcgtaggtggtaaggttaaagaaaatcgtgttcgttag |
279 |
Q |
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| T |
42679401 |
gttcaaaacctattggtgttgctggacatattattcctaggaatttcccatcactaatgcttaggtggtaaggttaaagaaaatcgcgttcgttag |
42679306 |
T |
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