View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2312_high_35 (Length: 365)
Name: NF2312_high_35
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_high_35 |
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Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 45516905 - 45517255
Alignment:
| Q |
1 |
atgaaatagaagggccaaccttgattgtttactataaaaacagaatatgataattcaatgcattaatcaaaagctactataacagaatatttgacaaaat |
100 |
Q |
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| T |
45516905 |
atgaaatagaagggccaaccttgattgtttactataaaaacagaatatgataattcaatgcattaatcaaaagctactataacagaatatttgacaaaat |
45517004 |
T |
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| Q |
101 |
acttctgctaaagcgacttgtataactcgagtagtctctacttaaagcaactacctggactttaaaatcttttgcagccattggaatgacctcagatcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45517005 |
acttctgctaaagcgacttgtataactcgagtagtctctacttaaagcaactacctggactttaaaatcttttgcagccattggaatgacctcagatcca |
45517104 |
T |
|
| Q |
201 |
aaatcatttgcattaggataacaactcctgaaaatttatcaccatagaaaattagaaatcacatcatacttatctgagttgaactttgacacaaatcata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45517105 |
aaatcatttgcattaggataacaactcctgaaaatttatcaccatagaaaattagaaatcacatcatacttatctgagttgaactttgacacaaatcata |
45517204 |
T |
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| Q |
301 |
tgctaattacctgagaagtttgcgaagaacatctaatttaaacacatatat |
351 |
Q |
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| T |
45517205 |
tgctaattacctgagaagtttgcgaagaacatctaatttaaacacatatat |
45517255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 25349244 - 25349480
Alignment:
| Q |
1 |
atgaaatagaagggccaaccttgattgtttactataaaaacagaatatgataattcaatgcattaatcaaaagctactataacagaatatttgacaaaat |
100 |
Q |
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||||||||||||| ||||| ||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
25349244 |
atgaaatagaaggaccaacattggttatttactataaaaacagaatatgataattcaatgcattaataaaaagctactataacagaacatttgacaaaat |
25349343 |
T |
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| Q |
101 |
acttctgctaaagcgacttgtataactcgagtagtctctacttaaagcaactacctggactttaaaatcttttgcagccattggaatgacctcagatcca |
200 |
Q |
| |
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|||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
25349344 |
acttttgctaaagcgacttgtatcactcgagtagtctctacttaaagaaactacctggactttaaaatcttttgcagccaatggaatgacctcagatcca |
25349443 |
T |
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| Q |
201 |
aaatcatttgcattaggataacaactcctgaaaattt |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
25349444 |
aaatcatttgcattaggataacaactcctgaaaattt |
25349480 |
T |
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