View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2312_high_36 (Length: 361)
Name: NF2312_high_36
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_high_36 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 351
Target Start/End: Original strand, 54343752 - 54344089
Alignment:
| Q |
19 |
gtcaaccatcattttattttcggatggtggagataaaaaattgtgtgacacaataacttcatcaaatcctgtttcaccactaaagtgtg--acacatata |
116 |
Q |
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| T |
54343752 |
gtcaaccatcattttattttcggacggtggagataaaaaattgtgtgacacaataacttcatcaaatcctgtttcaccactaaagtgtgtgacacatata |
54343851 |
T |
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| Q |
117 |
gctcatgtaaaaaagttttaaaggtagnnnnnnnnnn----ggaggggttttaaaggttgatgttgatgtgtatcttacggttatataaacacacataac |
212 |
Q |
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| T |
54343852 |
gctcatgtaaaaaagttttaaaggtagttttttttttttttggaggggttttaaaggttgatgttgatgtgtatcttacggttatataaacacacataac |
54343951 |
T |
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| Q |
213 |
taataacgttttgttatcatgtcaaatatattaacttgatcttgcttttttaaagtggatcctgccttcnnnnnnnnnnnnggttttatcacggctaagc |
312 |
Q |
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| T |
54343952 |
taataacgttttgttatcatgtcaaatatattaacttgatcttgcttttttaaagtggatcctgccttctttttattttttggttttatcacagctaagc |
54344051 |
T |
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| Q |
313 |
aattaaacatagtacccagttgaaacttttatttttctt |
351 |
Q |
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|||||||||||||| |||||||||||||||||||||||| |
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| T |
54344052 |
aattaaacatagta-ccagttgaaacttttatttttctt |
54344089 |
T |
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