View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2312_high_39 (Length: 349)

Name: NF2312_high_39
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2312_high_39
NF2312_high_39
[»] chr8 (17 HSPs)
chr8 (28-308)||(43290507-43290789)
chr8 (11-58)||(45101532-45101579)
chr8 (11-61)||(42543365-42543415)
chr8 (11-59)||(30925541-30925589)
chr8 (11-59)||(32175092-32175140)
chr8 (11-59)||(34474087-34474135)
chr8 (22-61)||(40413248-40413287)
chr8 (22-58)||(21273598-21273634)
chr8 (25-57)||(37101574-37101606)
chr8 (15-53)||(9963826-9963864)
chr8 (12-54)||(28570300-28570342)
chr8 (12-54)||(28577893-28577935)
chr8 (24-58)||(40842073-40842107)
chr8 (25-59)||(42768008-42768042)
chr8 (25-58)||(11879377-11879410)
chr8 (25-58)||(11896793-11896826)
chr8 (11-51)||(38576546-38576586)
[»] chr7 (19 HSPs)
chr7 (11-59)||(7807191-7807239)
chr7 (11-59)||(43260127-43260175)
chr7 (22-61)||(43657149-43657188)
chr7 (11-55)||(32154441-32154485)
chr7 (22-57)||(40717127-40717162)
chr7 (11-53)||(19426716-19426758)
chr7 (12-58)||(27778199-27778245)
chr7 (11-57)||(40842543-40842589)
chr7 (12-54)||(47424877-47424919)
chr7 (17-61)||(155866-155910)
chr7 (12-52)||(28597017-28597057)
chr7 (20-60)||(29355477-29355517)
chr7 (22-57)||(12142031-12142066)
chr7 (22-59)||(8792487-8792524)
chr7 (22-59)||(34348914-34348951)
chr7 (23-60)||(42663232-42663269)
chr7 (11-51)||(7390669-7390709)
chr7 (32-60)||(30982252-30982280)
chr7 (28-56)||(36990193-36990221)
[»] chr5 (21 HSPs)
chr5 (11-57)||(3141632-3141678)
chr5 (11-56)||(3634630-3634675)
chr5 (23-59)||(6515326-6515362)
chr5 (11-57)||(40223674-40223720)
chr5 (25-60)||(5130263-5130298)
chr5 (22-61)||(11767875-11767914)
chr5 (12-59)||(13613850-13613897)
chr5 (22-57)||(16202868-16202903)
chr5 (20-59)||(18449389-18449428)
chr5 (22-53)||(31284287-31284318)
chr5 (22-56)||(125239-125273)
chr5 (11-57)||(10232636-10232682)
chr5 (11-57)||(12661835-12661881)
chr5 (22-59)||(2117527-2117564)
chr5 (22-59)||(9403660-9403697)
chr5 (22-59)||(19127271-19127308)
chr5 (22-59)||(33567126-33567163)
chr5 (22-58)||(11306843-11306879)
chr5 (25-53)||(14206540-14206568)
chr5 (11-59)||(14914507-14914554)
chr5 (20-60)||(21575713-21575753)
[»] chr4 (22 HSPs)
chr4 (11-61)||(31240785-31240835)
chr4 (11-59)||(36792469-36792517)
chr4 (11-58)||(22257084-22257131)
chr4 (22-57)||(1580171-1580206)
chr4 (11-58)||(48099946-48099993)
chr4 (12-59)||(51039004-51039051)
chr4 (11-57)||(6953276-6953322)
chr4 (22-58)||(31275293-31275329)
chr4 (25-61)||(48372110-48372146)
chr4 (22-57)||(5234360-5234395)
chr4 (11-54)||(41952965-41953008)
chr4 (22-60)||(11063975-11064013)
chr4 (11-57)||(41951672-41951718)
chr4 (22-59)||(1033295-1033332)
chr4 (11-56)||(9567580-9567625)
chr4 (25-58)||(30973733-30973766)
chr4 (22-59)||(42915106-42915143)
chr4 (26-59)||(43168603-43168636)
chr4 (22-59)||(47998740-47998777)
chr4 (11-59)||(39241189-39241237)
chr4 (22-58)||(51389463-51389499)
chr4 (11-58)||(52392114-52392159)
[»] chr1 (15 HSPs)
chr1 (11-59)||(48872838-48872886)
chr1 (13-57)||(4638063-4638107)
chr1 (11-59)||(15061982-15062030)
chr1 (22-58)||(49425883-49425919)
chr1 (11-58)||(5304718-5304765)
chr1 (12-53)||(7503603-7503644)
chr1 (22-58)||(52020312-52020348)
chr1 (22-53)||(45272050-45272081)
chr1 (22-61)||(51702997-51703036)
chr1 (12-58)||(8391227-8391273)
chr1 (22-60)||(28716290-28716328)
chr1 (11-57)||(31480023-31480069)
chr1 (22-59)||(49453624-49453661)
chr1 (22-58)||(30631733-30631769)
chr1 (22-58)||(51571573-51571609)
[»] chr3 (21 HSPs)
chr3 (11-58)||(43169642-43169689)
chr3 (11-60)||(51464152-51464201)
chr3 (11-59)||(108566-108614)
chr3 (22-58)||(6126602-6126638)
chr3 (11-59)||(31997939-31997987)
chr3 (11-59)||(51650493-51650541)
chr3 (11-57)||(5399052-5399098)
chr3 (11-53)||(31249214-31249256)
chr3 (11-57)||(46003843-46003889)
chr3 (22-58)||(7231894-7231930)
chr3 (22-54)||(44695159-44695191)
chr3 (11-59)||(55344182-55344230)
chr3 (22-61)||(46473275-46473314)
chr3 (22-60)||(20380775-20380813)
chr3 (11-57)||(20893131-20893177)
chr3 (17-58)||(7293987-7294028)
chr3 (11-51)||(41309136-41309176)
chr3 (11-59)||(44365178-44365226)
chr3 (22-58)||(46953096-46953132)
chr3 (11-59)||(51406257-51406305)
chr3 (22-58)||(51673010-51673046)
[»] chr2 (11 HSPs)
chr2 (22-58)||(19913932-19913968)
chr2 (22-57)||(34138925-34138960)
chr2 (22-60)||(26321583-26321621)
chr2 (22-59)||(36133121-36133158)
chr2 (12-56)||(9202406-9202450)
chr2 (11-51)||(45515494-45515534)
chr2 (11-53)||(7428564-7428606)
chr2 (11-57)||(36909732-36909777)
chr2 (22-54)||(12600195-12600227)
chr2 (32-60)||(28244243-28244271)
chr2 (29-57)||(42283139-42283167)
[»] scaffold0001 (1 HSPs)
scaffold0001 (25-60)||(396012-396047)
[»] scaffold0204 (1 HSPs)
scaffold0204 (25-59)||(27490-27524)
[»] scaffold0018 (1 HSPs)
scaffold0018 (22-59)||(36149-36186)
[»] chr6 (5 HSPs)
chr6 (11-59)||(9954685-9954733)
chr6 (22-59)||(2241713-2241750)
chr6 (25-58)||(25166775-25166808)
chr6 (17-58)||(26378273-26378314)
chr6 (11-60)||(28548906-28548955)
[»] scaffold0060 (1 HSPs)
scaffold0060 (22-57)||(6964-6999)
[»] scaffold0036 (1 HSPs)
scaffold0036 (22-61)||(18150-18189)


Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 28 - 308
Target Start/End: Complemental strand, 43290789 - 43290507
Alignment:
Q  28 tatgaaatggttgttcaaatatcactactctt--aagttagatctaatcacacctaaataaataaaagtagatgtgcatactttttaaagtataaaacaa 125  Q
    |||||||||  |||| ||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  43290789 tatgaaatgagtgtttaaatatcactactcttttaagttagatctaatcacatctaaataaataaaagtagatgtgcatactttttaaagtataaaacaa 43290690  T
Q  126 aatatgtttgttttatttttctattttggggagttgaaataaatatttgatagatcatagtagatgttcatgtactactagtatgcataatgtggtagcc 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||    
T  43290689 aatatgtttgttttatttttctattttggggagttgaaataaatatttgatagatcatagtagatgtgcatgtactagtaatatgcataatgtggtagcc 43290590  T
Q  226 attcgtgtgggggtcacaatacatataagccccacgttccttcttttatatctttctagctgcccttctccttctccttctcc 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43290589 attcgtgtgggggtcacaatacatataagccccacgttccttcttttatatctttctagctgcccttctccttctccttctcc 43290507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 45101532 - 45101579
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatcactactct 58  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||    
T  45101532 gttgtcaccaaaagttgtatgaaatggttgttcaaatatcactactct 45101579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 42543415 - 42543365
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatcactactcttaa 61  Q
    ||||||| || |||||||||||||||||||||||| |||||||||||||||    
T  42543415 gttgtcaccaaaagttgtatgaaatggttgttcaattatcactactcttaa 42543365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 30925589 - 30925541
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatcactactctt 59  Q
    ||||||| || ||||||||| ||||||||||||||||||||||||||||    
T  30925589 gttgtcaccaaaagttgtataaaatggttgttcaaatatcactactctt 30925541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 32175092 - 32175140
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatcactactctt 59  Q
    ||||||| || |||||||||||||||||||||||||||||| |||||||    
T  32175092 gttgtcaccaaaagttgtatgaaatggttgttcaaatatcattactctt 32175140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 34474087 - 34474135
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatcactactctt 59  Q
    ||||||| || |||||||||||||||||||||||||||||| |||||||    
T  34474087 gttgtcaccaaaagttgtatgaaatggttgttcaaatatcattactctt 34474135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 40413287 - 40413248
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcactactcttaa 61  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  40413287 aagttgtatcaaatggttgttcaaatatcactactcttaa 40413248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 21273634 - 21273598
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcactactct 58  Q
    |||||||||||||| ||||||||||||||||||||||    
T  21273634 aagttgtatgaaatagttgttcaaatatcactactct 21273598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 37101606 - 37101574
Alignment:
Q  25 ttgtatgaaatggttgttcaaatatcactactc 57  Q
    |||||||||||||||||||||||||||||||||    
T  37101606 ttgtatgaaatggttgttcaaatatcactactc 37101574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 9963826 - 9963864
Alignment:
Q  15 tcatcagaagttgtatgaaatggttgttcaaatatcact 53  Q
    |||||| ||||||||| ||||||||||||||||||||||    
T  9963826 tcatcaaaagttgtataaaatggttgttcaaatatcact 9963864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 28570342 - 28570300
Alignment:
Q  12 ttgtcatcagaagttgtatgaaatggttgttcaaatatcacta 54  Q
    |||||| || ||||||||||||||||||||||||||| |||||    
T  28570342 ttgtcaccaaaagttgtatgaaatggttgttcaaataccacta 28570300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 28577935 - 28577893
Alignment:
Q  12 ttgtcatcagaagttgtatgaaatggttgttcaaatatcacta 54  Q
    |||||| || ||||||||||||||||||||||||||| |||||    
T  28577935 ttgtcaccaaaagttgtatgaaatggttgttcaaataccacta 28577893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 58
Target Start/End: Original strand, 40842073 - 40842107
Alignment:
Q  24 gttgtatgaaatggttgttcaaatatcactactct 58  Q
    ||||||| |||||||||||||||||||||||||||    
T  40842073 gttgtatcaaatggttgttcaaatatcactactct 40842107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 42768042 - 42768008
Alignment:
Q  25 ttgtatgaaatggttgttcaaatatcactactctt 59  Q
    |||||||||||| ||||||||||||||||||||||    
T  42768042 ttgtatgaaatgtttgttcaaatatcactactctt 42768008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 11879410 - 11879377
Alignment:
Q  25 ttgtatgaaatggttgttcaaatatcactactct 58  Q
    ||||||||||||||| ||||||||||||||||||    
T  11879410 ttgtatgaaatggtttttcaaatatcactactct 11879377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 11896826 - 11896793
Alignment:
Q  25 ttgtatgaaatggttgttcaaatatcactactct 58  Q
    ||||||||||||||| ||||||||||||||||||    
T  11896826 ttgtatgaaatggtttttcaaatatcactactct 11896793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 38576546 - 38576586
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatca 51  Q
    ||||||| || ||||||| ||||||||||||||||||||||    
T  38576546 gttgtcaccaaaagttgtttgaaatggttgttcaaatatca 38576586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 7807191 - 7807239
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatcactactctt 59  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7807191 gttgtcatcaaaagttgtatgaaatggttgttcaaatatcactactctt 7807239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 43260127 - 43260175
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatcactactctt 59  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||    
T  43260127 gttgtcatcaaaagttgtatgaaatggttgttcaaatatgactactctt 43260175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 43657149 - 43657188
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcactactcttaa 61  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  43657149 aagttgtatgaaatggttgttcaaatatcactactcttaa 43657188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 32154485 - 32154441
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatcactac 55  Q
    ||||||| || ||||||||||||||||||||||||||||||||||    
T  32154485 gttgtcaccaaaagttgtatgaaatggttgttcaaatatcactac 32154441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 40717162 - 40717127
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcactactc 57  Q
    ||||||||||||||||||||||||||||||||||||    
T  40717162 aagttgtatgaaatggttgttcaaatatcactactc 40717127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 19426716 - 19426758
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatcact 53  Q
    ||||||| || ||||||||||||||||||||||||||||||||    
T  19426716 gttgtcaccaaaagttgtatgaaatggttgttcaaatatcact 19426758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 27778199 - 27778245
Alignment:
Q  12 ttgtcatcagaagttgtatgaaatggttgttcaaatatcactactct 58  Q
    |||||| || ||||| |||||||||||||||||||||||||||||||    
T  27778199 ttgtcaccaaaagttatatgaaatggttgttcaaatatcactactct 27778245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 40842543 - 40842589
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatcactactc 57  Q
    ||||||| || |||||||||||||||||||||||||||||| |||||    
T  40842543 gttgtcaccaaaagttgtatgaaatggttgttcaaatatcattactc 40842589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 47424919 - 47424877
Alignment:
Q  12 ttgtcatcagaagttgtatgaaatggttgttcaaatatcacta 54  Q
    |||||| || |||||||||||||||||||||||||||||||||    
T  47424919 ttgtcaccaaaagttgtatgaaatggttgttcaaatatcacta 47424877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 155910 - 155866
Alignment:
Q  17 atcagaagttgtatgaaatggttgttcaaatatcactactcttaa 61  Q
    |||| ||||||| | ||||||||||||||||||||||||||||||    
T  155910 atcaaaagttgtctaaaatggttgttcaaatatcactactcttaa 155866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 28597017 - 28597057
Alignment:
Q  12 ttgtcatcagaagttgtatgaaatggttgttcaaatatcac 52  Q
    |||||| || |||||||||||||||||||||||||||||||    
T  28597017 ttgtcaccaaaagttgtatgaaatggttgttcaaatatcac 28597057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 29355477 - 29355517
Alignment:
Q  20 agaagttgtatgaaatggttgttcaaatatcactactctta 60  Q
    ||||||||| | |||||||||||||||||||||||||||||    
T  29355477 agaagttgtcttaaatggttgttcaaatatcactactctta 29355517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 57
Target Start/End: Original strand, 12142031 - 12142066
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcactactc 57  Q
    ||||||||| ||||||||||||||||||||||||||    
T  12142031 aagttgtatcaaatggttgttcaaatatcactactc 12142066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 8792524 - 8792487
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcactactctt 59  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  8792524 aagttgtatcaaatggttgttcaaatatcattactctt 8792487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 34348951 - 34348914
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcactactctt 59  Q
    |||||||||||||| | |||||||||||||||||||||    
T  34348951 aagttgtatgaaatagatgttcaaatatcactactctt 34348914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 42663232 - 42663269
Alignment:
Q  23 agttgtatgaaatggttgttcaaatatcactactctta 60  Q
    |||||||  |||||||||||||||||||||||||||||    
T  42663232 agttgtaaaaaatggttgttcaaatatcactactctta 42663269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 7390709 - 7390669
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatca 51  Q
    ||||||| || || |||||||||||||||||||||||||||    
T  7390709 gttgtcaccaaaaattgtatgaaatggttgttcaaatatca 7390669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 60
Target Start/End: Complemental strand, 30982280 - 30982252
Alignment:
Q  32 aaatggttgttcaaatatcactactctta 60  Q
    |||||||||||||||||||||||||||||    
T  30982280 aaatggttgttcaaatatcactactctta 30982252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 56
Target Start/End: Original strand, 36990193 - 36990221
Alignment:
Q  28 tatgaaatggttgttcaaatatcactact 56  Q
    |||||||||||||||||||||||||||||    
T  36990193 tatgaaatggttgttcaaatatcactact 36990221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 3141632 - 3141678
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatcactactc 57  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  3141632 gttgtcatcaaaagttgtatgaaatggttgttcaaatatcactactc 3141678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 3634630 - 3634675
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatcactact 56  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||    
T  3634630 gttgtcatcaaaagttgtatgtaatggttgttcaaatatcactact 3634675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 6515362 - 6515326
Alignment:
Q  23 agttgtatgaaatggttgttcaaatatcactactctt 59  Q
    |||||||||||||||||||||||||||||||||||||    
T  6515362 agttgtatgaaatggttgttcaaatatcactactctt 6515326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 40223720 - 40223674
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatcactactc 57  Q
    ||||||| || || |||||||||||||||||||||||||||||||||    
T  40223720 gttgtcaccaaaaattgtatgaaatggttgttcaaatatcactactc 40223674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 60
Target Start/End: Complemental strand, 5130298 - 5130263
Alignment:
Q  25 ttgtatgaaatggttgttcaaatatcactactctta 60  Q
    ||||||||||| ||||||||||||||||||||||||    
T  5130298 ttgtatgaaatagttgttcaaatatcactactctta 5130263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 11767914 - 11767875
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcactactcttaa 61  Q
    ||||||| | ||||||||||||||||||||||||||||||    
T  11767914 aagttgtctaaaatggttgttcaaatatcactactcttaa 11767875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 13613897 - 13613850
Alignment:
Q  12 ttgtcatcagaagttgtatgaaatggttgttcaaatatcactactctt 59  Q
    |||||| || ||||||||||||||| ||||||||||||||||| ||||    
T  13613897 ttgtcaccaaaagttgtatgaaatgattgttcaaatatcactattctt 13613850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 57
Target Start/End: Original strand, 16202868 - 16202903
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcactactc 57  Q
    ||||||||||||||| ||||||||||||||||||||    
T  16202868 aagttgtatgaaatgattgttcaaatatcactactc 16202903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 18449389 - 18449428
Alignment:
Q  20 agaagttgtatgaaatggttgttcaaatatcactactctt 59  Q
    |||||||||||||||||||| |||||||||||||| ||||    
T  18449389 agaagttgtatgaaatggttcttcaaatatcactaatctt 18449428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 53
Target Start/End: Complemental strand, 31284318 - 31284287
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcact 53  Q
    ||||||||||||||||||||||||||||||||    
T  31284318 aagttgtatgaaatggttgttcaaatatcact 31284287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 125239 - 125273
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcactact 56  Q
    ||||||||| |||||||||||||||||||||||||    
T  125239 aagttgtatcaaatggttgttcaaatatcactact 125273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 10232636 - 10232682
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatcactactc 57  Q
    ||||||| || ||||||||| |||| |||||||||||||||||||||    
T  10232636 gttgtcaccaaaagttgtataaaatagttgttcaaatatcactactc 10232682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 12661881 - 12661835
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatcactactc 57  Q
    ||||||| || |||||||||||||| |||||||||||||||| ||||    
T  12661881 gttgtcaccaaaagttgtatgaaatagttgttcaaatatcaccactc 12661835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 2117564 - 2117527
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcactactctt 59  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  2117564 aagttgtatcaaatagttgttcaaatatcactactctt 2117527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 9403660 - 9403697
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcactactctt 59  Q
    ||||||||| ||||||||||| ||||||||||||||||    
T  9403660 aagttgtatcaaatggttgtttaaatatcactactctt 9403697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 19127271 - 19127308
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcactactctt 59  Q
    ||||||| | ||||||||||||||||||||||||||||    
T  19127271 aagttgtttaaaatggttgttcaaatatcactactctt 19127308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 33567163 - 33567126
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcactactctt 59  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  33567163 aagttgtatcaaatggttgttcatatatcactactctt 33567126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 11306843 - 11306879
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcactactct 58  Q
    ||||||||| |||| ||||||||||||||||||||||    
T  11306843 aagttgtatcaaatagttgttcaaatatcactactct 11306879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 53
Target Start/End: Original strand, 14206540 - 14206568
Alignment:
Q  25 ttgtatgaaatggttgttcaaatatcact 53  Q
    |||||||||||||||||||||||||||||    
T  14206540 ttgtatgaaatggttgttcaaatatcact 14206568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 14914507 - 14914554
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatcactactctt 59  Q
    |||||||||| ||||| |||||||||| ||| |||||||||||||||||    
T  14914507 gttgtcatca-aagttatatgaaatggatgtacaaatatcactactctt 14914554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 21575753 - 21575713
Alignment:
Q  20 agaagttgtatgaaatggttgttcaaatatcactactctta 60  Q
    ||||||||| | |||||||||||||||||||| ||||||||    
T  21575753 agaagttgtctcaaatggttgttcaaatatcattactctta 21575713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 31240785 - 31240835
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatcactactcttaa 61  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  31240785 gttgtcaccaaaagttgtatgaaatggttgttcaaatatcactactcttaa 31240835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 36792469 - 36792517
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatcactactctt 59  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||    
T  36792469 gttgtcaccaaaagttgtatgaaatggttgttcaaatatcactactctt 36792517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 22257131 - 22257084
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatcactactct 58  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||    
T  22257131 gttgtcaccaaaagttgtatgaaatggttgttcaaatatcactactct 22257084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 1580206 - 1580171
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcactactc 57  Q
    ||||||||||||||||||||||||||||||||||||    
T  1580206 aagttgtatgaaatggttgttcaaatatcactactc 1580171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 48099946 - 48099993
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatcactactct 58  Q
    ||||||| || ||||||||||||||||||||| |||||||||||||||    
T  48099946 gttgtcaccaaaagttgtatgaaatggttgtttaaatatcactactct 48099993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 51039051 - 51039004
Alignment:
Q  12 ttgtcatcagaagttgtatgaaatggttgttcaaatatcactactctt 59  Q
    |||||| || ||||||||||||||||||||| ||||||||||||||||    
T  51039051 ttgtcaccaaaagttgtatgaaatggttgtttaaatatcactactctt 51039004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 6953322 - 6953276
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatcactactc 57  Q
    ||||||| || |||||||| |||||||||||||||||||||||||||    
T  6953322 gttgtcaccaaaagttgtaagaaatggttgttcaaatatcactactc 6953276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 31275293 - 31275329
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcactactct 58  Q
    ||||||||| |||||||||||||||||||||||||||    
T  31275293 aagttgtatcaaatggttgttcaaatatcactactct 31275329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 48372146 - 48372110
Alignment:
Q  25 ttgtatgaaatggttgttcaaatatcactactcttaa 61  Q
    ||||||||||| |||||||||||||||||||||||||    
T  48372146 ttgtatgaaatagttgttcaaatatcactactcttaa 48372110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 5234395 - 5234360
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcactactc 57  Q
    ||||||||| ||||||||||||||||||||||||||    
T  5234395 aagttgtatcaaatggttgttcaaatatcactactc 5234360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 41952965 - 41953008
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatcacta 54  Q
    ||||||| || ||||| |||||||||||||||||||||||||||    
T  41952965 gttgtcaccaaaagttatatgaaatggttgttcaaatatcacta 41953008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 11064013 - 11063975
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcactactctta 60  Q
    ||||||| | |||||||||||||||||||||||||||||    
T  11064013 aagttgtcttaaatggttgttcaaatatcactactctta 11063975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 41951672 - 41951718
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatcactactc 57  Q
    ||||||| || || || ||||||||||||||||||||||||||||||    
T  41951672 gttgtcaccaaaaattatatgaaatggttgttcaaatatcactactc 41951718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 1033295 - 1033332
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcactactctt 59  Q
    ||||||| | ||||||||||||||||||||||||||||    
T  1033295 aagttgtttaaaatggttgttcaaatatcactactctt 1033332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 9567625 - 9567580
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatcactact 56  Q
    ||||||| || || |||||| |||||||||||||||||||||||||    
T  9567625 gttgtcaccaaaaattgtataaaatggttgttcaaatatcactact 9567580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 30973733 - 30973766
Alignment:
Q  25 ttgtatgaaatggttgttcaaatatcactactct 58  Q
    ||||||||||| ||||||||||||||||||||||    
T  30973733 ttgtatgaaatagttgttcaaatatcactactct 30973766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 42915143 - 42915106
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcactactctt 59  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  42915143 aagttgtatcaaatagttgttcaaatatcactactctt 42915106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 43168636 - 43168603
Alignment:
Q  26 tgtatgaaatggttgttcaaatatcactactctt 59  Q
    |||||||||||||||||||||||| |||||||||    
T  43168636 tgtatgaaatggttgttcaaatattactactctt 43168603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 47998740 - 47998777
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcactactctt 59  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  47998740 aagttgtatcaaatgattgttcaaatatcactactctt 47998777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 39241237 - 39241189
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatcactactctt 59  Q
    ||||||| || ||||||| | ||||||||||| ||||||||||||||||    
T  39241237 gttgtcaccaaaagttgtctcaaatggttgttaaaatatcactactctt 39241189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 51389463 - 51389499
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcactactct 58  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  51389463 aagttgtatcaaatggttgttcaaatatcactgctct 51389499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 52392159 - 52392114
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatcactactct 58  Q
    ||||||| || |||||||||||||||||||||  ||||||||||||||    
T  52392159 gttgtcaccaaaagttgtatgaaatggttgtt--aatatcactactct 52392114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 48872886 - 48872838
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatcactactctt 59  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||    
T  48872886 gttgtcaccaaaagttgtatgaaatggttgttcaaatatcactactctt 48872838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 4638063 - 4638107
Alignment:
Q  13 tgtcatcagaagttgtatgaaatggttgttcaaatatcactactc 57  Q
    ||||| || ||||||||||||||||||||||||||||||||||||    
T  4638063 tgtcaccaaaagttgtatgaaatggttgttcaaatatcactactc 4638107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 15061982 - 15062030
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatcactactctt 59  Q
    ||||||| || ||||| ||||||||||||||||||||||||||||||||    
T  15061982 gttgtcaccaaaagttatatgaaatggttgttcaaatatcactactctt 15062030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 49425883 - 49425919
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcactactct 58  Q
    |||||||||||||||||||||||||||||||||||||    
T  49425883 aagttgtatgaaatggttgttcaaatatcactactct 49425919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 5304765 - 5304718
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatcactactct 58  Q
    ||||||| || || ||||||||||||||||||||||||||||||||||    
T  5304765 gttgtcaccaaaaattgtatgaaatggttgttcaaatatcactactct 5304718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 7503603 - 7503644
Alignment:
Q  12 ttgtcatcagaagttgtatgaaatggttgttcaaatatcact 53  Q
    |||||| || ||||||||||||||||||||||||||||||||    
T  7503603 ttgtcaccaaaagttgtatgaaatggttgttcaaatatcact 7503644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 52020348 - 52020312
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcactactct 58  Q
    |||||||||||||||||||||||||||||||| ||||    
T  52020348 aagttgtatgaaatggttgttcaaatatcactgctct 52020312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 53
Target Start/End: Complemental strand, 45272081 - 45272050
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcact 53  Q
    ||||||||||||||||||||||||||||||||    
T  45272081 aagttgtatgaaatggttgttcaaatatcact 45272050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 51703036 - 51702997
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcactactcttaa 61  Q
    ||||||| ||||||||||||||||||||||||||| ||||    
T  51703036 aagttgtctgaaatggttgttcaaatatcactactattaa 51702997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 8391273 - 8391227
Alignment:
Q  12 ttgtcatcagaagttgtatgaaatggttgttcaaatatcactactct 58  Q
    |||||| || || |||||||||||||||||||| |||||||||||||    
T  8391273 ttgtcaccaaaaattgtatgaaatggttgttcagatatcactactct 8391227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 28716290 - 28716328
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcactactctta 60  Q
    ||||||| | |||||||||||||||||||||||||||||    
T  28716290 aagttgtctcaaatggttgttcaaatatcactactctta 28716328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 31480069 - 31480023
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatcactactc 57  Q
    ||||||| || || ||||||||||| |||||||||||||||||||||    
T  31480069 gttgtcaccaaaaattgtatgaaatagttgttcaaatatcactactc 31480023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 49453624 - 49453661
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcactactctt 59  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  49453624 aagttgtatcaaatagttgttcaaatatcactactctt 49453661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 30631769 - 30631733
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcactactct 58  Q
    ||||||| | |||||||||||||||||||||||||||    
T  30631769 aagttgtctaaaatggttgttcaaatatcactactct 30631733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 51571573 - 51571609
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcactactct 58  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  51571573 aagttgtattaaatggttgttcaaatatcacaactct 51571609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 43169689 - 43169642
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatcactactct 58  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||    
T  43169689 gttgtcaccaaaagttgtatgaaatggttgttcaaatatcactactct 43169642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 51464201 - 51464152
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatcactactctta 60  Q
    ||||||| || ||||||||| |||||||||||||||||||||||||||||    
T  51464201 gttgtcaccaaaagttgtataaaatggttgttcaaatatcactactctta 51464152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 108566 - 108614
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatcactactctt 59  Q
    ||||||| || |||||||||||||| |||||||||||||||||||||||    
T  108566 gttgtcaccaaaagttgtatgaaatagttgttcaaatatcactactctt 108614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 6126602 - 6126638
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcactactct 58  Q
    |||||||||||||||||||||||||||||||||||||    
T  6126602 aagttgtatgaaatggttgttcaaatatcactactct 6126638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 31997939 - 31997987
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatcactactctt 59  Q
    |||||||||| ||||||| | ||||||||||||||||||||||||||||    
T  31997939 gttgtcatcaaaagttgtctcaaatggttgttcaaatatcactactctt 31997987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 51650493 - 51650541
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatcactactctt 59  Q
    ||||||| || ||||||||||||||||||||||||||||||| ||||||    
T  51650493 gttgtcaccaaaagttgtatgaaatggttgttcaaatatcaccactctt 51650541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 5399052 - 5399098
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatcactactc 57  Q
    ||||||| || |||||| |||||||||||||||||||||||||||||    
T  5399052 gttgtcaccaaaagttggatgaaatggttgttcaaatatcactactc 5399098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 31249256 - 31249214
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatcact 53  Q
    ||||||| || ||||||||||||||||||||||||||||||||    
T  31249256 gttgtcaccaaaagttgtatgaaatggttgttcaaatatcact 31249214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 46003843 - 46003889
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatcactactc 57  Q
    ||||||| || |||||||||||||||||||||||||||||| |||||    
T  46003843 gttgtcaccaaaagttgtatgaaatggttgttcaaatatcattactc 46003889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 7231930 - 7231894
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcactactct 58  Q
    ||||||||| |||||||||||||||||||||||||||    
T  7231930 aagttgtatcaaatggttgttcaaatatcactactct 7231894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 44695159 - 44695191
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcacta 54  Q
    |||||||||||||||||||||||||||||||||    
T  44695159 aagttgtatgaaatggttgttcaaatatcacta 44695191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 55344230 - 55344182
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatcactactctt 59  Q
    |||||||| | | |||||||||||| |||||||||||||||||||||||    
T  55344230 gttgtcataaaatgttgtatgaaatagttgttcaaatatcactactctt 55344182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 46473275 - 46473314
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcactactcttaa 61  Q
    ||||||||| |||||||||||||||||||| |||||||||    
T  46473275 aagttgtatcaaatggttgttcaaatatcattactcttaa 46473314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 20380813 - 20380775
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcactactctta 60  Q
    ||||||| | |||||||||||||||||||||||||||||    
T  20380813 aagttgtttaaaatggttgttcaaatatcactactctta 20380775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 20893177 - 20893131
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatcactactc 57  Q
    |||||||||| ||||||| | ||||||||||| ||||||||||||||    
T  20893177 gttgtcatcaaaagttgtctcaaatggttgttaaaatatcactactc 20893131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 7294028 - 7293987
Alignment:
Q  17 atcagaagttgtatgaaatggttgttcaaatatcactactct 58  Q
    |||| ||||||| | |||||||||||||||||||||||||||    
T  7294028 atcaaaagttgtctaaaatggttgttcaaatatcactactct 7293987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 41309136 - 41309176
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatca 51  Q
    ||||||| || ||||||||||||||| ||||||||||||||    
T  41309136 gttgtcaccaaaagttgtatgaaatgattgttcaaatatca 41309176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 44365226 - 44365178
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatcactactctt 59  Q
    ||||||| || || |||||| ||||||||||||||||||||| ||||||    
T  44365226 gttgtcaccaaaaattgtataaaatggttgttcaaatatcaccactctt 44365178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 46953096 - 46953132
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcactactct 58  Q
    ||||||||| |||| ||||||||||||||||||||||    
T  46953096 aagttgtatcaaatagttgttcaaatatcactactct 46953132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 51406305 - 51406257
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatcactactctt 59  Q
    ||||||| || ||||| |||||||| ||||||||||||||||| |||||    
T  51406305 gttgtcaccaaaagttatatgaaatagttgttcaaatatcacttctctt 51406257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 51673010 - 51673046
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcactactct 58  Q
    ||||||| | |||||||||||||||||||||||||||    
T  51673010 aagttgtctaaaatggttgttcaaatatcactactct 51673046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 19913932 - 19913968
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcactactct 58  Q
    |||||||||||||||||||||||||||||||||||||    
T  19913932 aagttgtatgaaatggttgttcaaatatcactactct 19913968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 34138960 - 34138925
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcactactc 57  Q
    ||||||||||||||||||||||||||||||||||||    
T  34138960 aagttgtatgaaatggttgttcaaatatcactactc 34138925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 26321621 - 26321583
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcactactctta 60  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  26321621 aagttgtatgaaatgattgttcaaatatcactactctta 26321583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 36133121 - 36133158
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcactactctt 59  Q
    |||||||||||||| |||||||||||||||||||||||    
T  36133121 aagttgtatgaaatagttgttcaaatatcactactctt 36133158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 9202450 - 9202406
Alignment:
Q  12 ttgtcatcagaagttgtatgaaatggttgttcaaatatcactact 56  Q
    ||||||| | || ||||||||||||||||||||||||||||||||    
T  9202450 ttgtcataaaaaattgtatgaaatggttgttcaaatatcactact 9202406  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 45515534 - 45515494
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatca 51  Q
    ||||||| || ||||||||||||||||||||||||||||||    
T  45515534 gttgtcaccaaaagttgtatgaaatggttgttcaaatatca 45515494  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 7428564 - 7428606
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatcact 53  Q
    ||||||| || || |||||||||||||||||||||||||||||    
T  7428564 gttgtcaccaaaaattgtatgaaatggttgttcaaatatcact 7428606  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 36909777 - 36909732
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatcactactc 57  Q
    |||||||||| |||||||||||||||| ||| |||||||||||||||    
T  36909777 gttgtcatca-aagttgtatgaaatggatgtacaaatatcactactc 36909732  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 12600195 - 12600227
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcacta 54  Q
    |||||||||||||| ||||||||||||||||||    
T  12600195 aagttgtatgaaatagttgttcaaatatcacta 12600227  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 60
Target Start/End: Complemental strand, 28244271 - 28244243
Alignment:
Q  32 aaatggttgttcaaatatcactactctta 60  Q
    |||||||||||||||||||||||||||||    
T  28244271 aaatggttgttcaaatatcactactctta 28244243  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 57
Target Start/End: Complemental strand, 42283167 - 42283139
Alignment:
Q  29 atgaaatggttgttcaaatatcactactc 57  Q
    |||||||||||||||||||||||||||||    
T  42283167 atgaaatggttgttcaaatatcactactc 42283139  T

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Target: scaffold0001 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 60
Target Start/End: Original strand, 396012 - 396047
Alignment:
Q  25 ttgtatgaaatggttgttcaaatatcactactctta 60  Q
    ||||||||||||||||||||||||||||||||||||    
T  396012 ttgtatgaaatggttgttcaaatatcactactctta 396047  T

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Target: scaffold0204 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 27490 - 27524
Alignment:
Q  25 ttgtatgaaatggttgttcaaatatcactactctt 59  Q
    |||||||||||||||||||||||||||||||||||    
T  27490 ttgtatgaaatggttgttcaaatatcactactctt 27524  T

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Target: scaffold0018 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 36149 - 36186
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcactactctt 59  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  36149 aagttgtatcaaatggttgttcaaatatcactactctt 36186  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 9954685 - 9954733
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatcactactctt 59  Q
    ||||||| || ||||||||| |||||||||||||||||||||| |||||    
T  9954685 gttgtcaccaaaagttgtattaaatggttgttcaaatatcactcctctt 9954733  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 2241750 - 2241713
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcactactctt 59  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  2241750 aagttgtatcaaatggttgttcaaatatcactattctt 2241713  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 25166775 - 25166808
Alignment:
Q  25 ttgtatgaaatggttgttcaaatatcactactct 58  Q
    |||||||||||||||||| |||||||||||||||    
T  25166775 ttgtatgaaatggttgtttaaatatcactactct 25166808  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 26378314 - 26378273
Alignment:
Q  17 atcagaagttgtatgaaatggttgttcaaatatcactactct 58  Q
    |||| ||||||| | |||||||||||||||||||||||||||    
T  26378314 atcaaaagttgtctaaaatggttgttcaaatatcactactct 26378273  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 28548955 - 28548906
Alignment:
Q  11 gttgtcatcagaagttgtatgaaatggttgttcaaatatcactactctta 60  Q
    ||||||| || ||||||||| ||||||||||||||||| || ||||||||    
T  28548955 gttgtcaccaaaagttgtataaaatggttgttcaaataacattactctta 28548906  T

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Target: scaffold0060 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 57
Target Start/End: Original strand, 6964 - 6999
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcactactc 57  Q
    ||||||||| ||||||||||||||||||||||||||    
T  6964 aagttgtataaaatggttgttcaaatatcactactc 6999  T

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Target: scaffold0036 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 18150 - 18189
Alignment:
Q  22 aagttgtatgaaatggttgttcaaatatcactactcttaa 61  Q
    ||||||||| |||| |||||||||||||||||||||||||    
T  18150 aagttgtatcaaatagttgttcaaatatcactactcttaa 18189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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