View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2312_high_42 (Length: 328)
Name: NF2312_high_42
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_high_42 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 510845 - 510550
Alignment:
| Q |
1 |
ctgctcttcacgttacatcaaacagagaccgttcatgattggaagaaattgacaaacataaaatgatttattttcaaaatactcataacatcataattga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
510845 |
ctgctcttcacgttacatcaaacagagaccgttcatgattggaagaaattgacaaacataaaatgatttattttcgaaatactcataacatcataattga |
510746 |
T |
|
| Q |
101 |
aatgtgtgatatttcatgtgtatatgtttggtaaattcctaccactaaatcaattttttccatatgtttcctttcctttcctttcctctataatattatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
510745 |
aatgtgtgatatttcatgtgtatatgtttggtaaattcctaccactaaatcaat-ttttccatatgtttcctttcctttcctttcctctataatattatt |
510647 |
T |
|
| Q |
201 |
tcaaattaataaaataaaattgcacatgccttcag----tatatatttcaaaatgtatggaacaaaattaaaaatgccactagatatgtattctctg |
293 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
510646 |
tcaaattaataaaataaaattgcacatgccttcagtatatatatatttcaaaatgtatggaacaaaattaaaaatgccactagatatgtattctctg |
510550 |
T |
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