View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2312_high_45 (Length: 323)

Name: NF2312_high_45
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2312_high_45
NF2312_high_45
[»] chr8 (2 HSPs)
chr8 (15-313)||(44252899-44253199)
chr8 (15-313)||(44249289-44249589)
[»] chr7 (8 HSPs)
chr7 (221-301)||(11819559-11819639)
chr7 (15-105)||(11820020-11820109)
chr7 (221-301)||(11809980-11810060)
chr7 (30-85)||(11809732-11809787)
chr7 (137-176)||(11815160-11815199)
chr7 (30-105)||(11816499-11816573)
chr7 (137-175)||(11814040-11814078)
chr7 (15-106)||(11808770-11808862)
[»] chr5 (1 HSPs)
chr5 (221-280)||(15273817-15273876)


Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 15 - 313
Target Start/End: Original strand, 44252899 - 44253199
Alignment:
Q  15 aggaggtatgattctcatctccaccattcaatttatttttcataattaaaactgcatgtggtacaagaaaagacaacaggttagattacacggtacaaat 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  44252899 aggaggtatgattctcatctccaccattcaatttatttttcataattaaaactgcacgtggtacaagaaaagaaaacaggttagattacacggtacaaat 44252998  T
Q  115 ctttgaccggagaagactcccaaaattttcttcttctaaagtatctataaattaagtgac--acnnnnnnnnnnnnnnnctttgaattatacatagaaga 212  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |                |||| ||||||||||||||||    
T  44252999 ctttgaccggaaaagactcccaaaattttcttcttctaaagtatctataaattaagtgacataaaaaaaaaaaaaaaaactttaaattatacatagaaga 44253098  T
Q  213 agtcccctaaaagtatcgataaaattctaaccctaacaatttttataattctctataattttaaagatcacgataaatctgcaatttaattaaaacctat 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44253099 agtcccctaaaagtatcgataaaattctaaccctaacaatttttataattctctataattttaaagatcacgataaatctgcaatttaattaaaacctat 44253198  T
Q  313 g 313  Q
    |    
T  44253199 g 44253199  T

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Target: chr8; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 15 - 313
Target Start/End: Original strand, 44249289 - 44249589
Alignment:
Q  15 aggaggtatgattctcatctccaccattcaatttatttttcataattaaaactgcatgtggtacaagaaaagacaacaggttagattacacggtacaaat 114  Q
    ||||||| |||| | |||||||||||| ||| |  |||||  || || ||||||||||| |||||| ||||||||| || ||||||||| | ||| ||||    
T  44249289 aggaggtgtgatgcccatctccaccatccaaatctttttttgtacttgaaactgcatgtagtacaa-aaaagacaatagtttagattacgcagtagaaat 44249387  T
Q  115 ctttgaccggagaagactcccaaaattttcttcttctaaagtatctataaattaagtgacacnnnnnnnnnnnnnnn--ctttgaattatacatagaaga 212  Q
    |||| || |||||||||||||||| ||||||||||||||| |||||||||||||||||||||                 |||||| ||||| ||||||||    
T  44249388 cttttactggagaagactcccaaatttttcttcttctaaaatatctataaattaagtgacacgcacaaacaaaaaagaactttgagttataaatagaaga 44249487  T
Q  213 agtcccct-aaaagtatcgataaaattctaaccctaacaatttttataattctctataattttaaagatcacgataaatctgcaatttaattaaaaccta 311  Q
     ||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||| |||||||||||||| |||    
T  44249488 ggtcccctcaaaaatatcgatcaaattctaaccctaacaatttttataattctctataatttcaaagatcacaattaatctacaatttaattaaaatcta 44249587  T
Q  312 tg 313  Q
    ||    
T  44249588 tg 44249589  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 221 - 301
Target Start/End: Original strand, 11819559 - 11819639
Alignment:
Q  221 aaaagtatcgataaaattctaaccctaacaatttttataattctctataattttaaagatcacgataaatctgcaatttaa 301  Q
    |||| ||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||| || |||||||    
T  11819559 aaaaatatcgatcaaattctaacactaacaatttttataattctctataatttcaaagatcatgataaatttgtaatttaa 11819639  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 11820020 - 11820109
Alignment:
Q  15 aggaggtatgattctcatctccaccattcaatttatttttcataattaaaactgcatgtggtacaagaaaagacaacaggttagattacac 105  Q
    |||||||||||| ||||||||||||||||||||  |  || |||||| ||||||||||||||| || ||| ||||| || |||||||||||    
T  11820020 aggaggtatgatgctcatctccaccattcaattcttcattaataattgaaactgcatgtggtataa-aaatgacaatagtttagattacac 11820109  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 221 - 301
Target Start/End: Original strand, 11809980 - 11810060
Alignment:
Q  221 aaaagtatcgataaaattctaaccctaacaatttttataattctctataattttaaagatcacgataaatctgcaatttaa 301  Q
    |||| ||||||| ||||||| || | ||||||||||| ||||||| ||||||||||||||||  ||||||||  |||||||    
T  11809980 aaaaatatcgatcaaattcttacaccaacaatttttacaattctccataattttaaagatcatcataaatctagaatttaa 11810060  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 11809732 - 11809787
Alignment:
Q  30 catctccaccattcaatttatttttcataattaaaactgcatgtggtacaagaaaa 85  Q
    ||||| ||| ||||||||||||||| |||||| ||||| |||||||||||| ||||    
T  11809732 catctgcactattcaatttatttttaataattgaaactacatgtggtacaaaaaaa 11809787  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 176
Target Start/End: Original strand, 11815160 - 11815199
Alignment:
Q  137 aaattttcttcttctaaagtatctataaattaagtgacac 176  Q
    ||||||||||| | ||||||||||||||||||||||||||    
T  11815160 aaattttcttcctataaagtatctataaattaagtgacac 11815199  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 11816499 - 11816573
Alignment:
Q  30 catctccaccattcaatttatttttcataattaaaactgcatgtggtacaagaaaagacaacaggttagattacac 105  Q
    ||||||||||||||||||| |  || |||||| |||||||||||||||||| |||||| || |  |||||||||||    
T  11816499 catctccaccattcaatttttcattaataattgaaactgcatgtggtacaa-aaaagataataatttagattacac 11816573  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 175
Target Start/End: Original strand, 11814040 - 11814078
Alignment:
Q  137 aaattttcttcttctaaagtatctataaattaagtgaca 175  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  11814040 aaattttcttcctataaagtatctataaattaagtgaca 11814078  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 106
Target Start/End: Original strand, 11808770 - 11808862
Alignment:
Q  15 aggaggtatgattctcatctccaccattcaatttatttttcataattaaaactgcatgtggta-caagaaaagacaacaggttagattacacg 106  Q
    |||||||||||  | ||||||||||||||||||| |  || |||| | ||||||||||| ||| ||| |||||||||  | ||||||||||||    
T  11808770 aggaggtatgacgcccatctccaccattcaatttttcattgataaatgaaactgcatgttgtaccaaaaaaagacaattgtttagattacacg 11808862  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 280
Target Start/End: Complemental strand, 15273876 - 15273817
Alignment:
Q  221 aaaagtatcgataaaattctaaccctaacaatttttataattctctataattttaaagat 280  Q
    |||| ||||||| |||||||||| |||| |||||||||||||||||||||||| ||||||    
T  15273876 aaaaatatcgatcaaattctaacactaataatttttataattctctataatttcaaagat 15273817  T

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