View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2312_high_46 (Length: 312)
Name: NF2312_high_46
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_high_46 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 10 - 274
Target Start/End: Complemental strand, 2625741 - 2625477
Alignment:
| Q |
10 |
ataatactttaatttactaagaatttcgaaagttcatccatgattgtgtttgattttcaatttgcagatgttcaatgcaactcaacataaaagaactatg |
109 |
Q |
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| T |
2625741 |
ataatactttaatttactaagaatttcgaaagttcatccatgattgtgtttgagtttcaatctgcagatgttcaatgcaactcaacataaaagaactatg |
2625642 |
T |
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| Q |
110 |
caggttatgaaccttggttccttggagttataatttcttaaagtcactgaattatgttcgtctaatacattgaatagagatctgaaagctcaaatgagtg |
209 |
Q |
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| T |
2625641 |
caggttatgaacattggttccttggagttataatttcttaaagtcactgaattatgttcgtctaatacattgagtagagatctgaaagctcaaatgagtg |
2625542 |
T |
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| Q |
210 |
tagtgagtgttgactgcactgattatagaaaatccttctctgtagttaaaatctgaaccattaga |
274 |
Q |
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| T |
2625541 |
tagtgagtgttgactgcactgattatagaaaatccttctctgtagttaaaatctgaaccattaga |
2625477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 200
Target Start/End: Complemental strand, 2640093 - 2640014
Alignment:
| Q |
122 |
cttggttccttggagttataatttcttaa-agtcactgaattatgttcgtctaatacattgaatagagatctgaaagctc |
200 |
Q |
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|||||||||||||||||| |||||| ||| |||||||| ||||||||||||||| ||||||||||||| |||||||||| |
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| T |
2640093 |
cttggttccttggagttacaatttcgtaacagtcactgcattatgttcgtctaagccattgaatagagacctgaaagctc |
2640014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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