View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2312_high_48 (Length: 308)

Name: NF2312_high_48
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2312_high_48
NF2312_high_48
[»] chr8 (1 HSPs)
chr8 (1-298)||(36370243-36370537)


Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 36370243 - 36370537
Alignment:
Q  1 tcttatactgattgctgatataaaatattctatgaagcaatgcttttattataaatatgaaacaattaaataagtgtatgtgagagacaggagggaacct 100  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||   ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  36370243 tcttatgctgattgctgagataaaatattctatgaagcaatgcttttat---aaatatgaaacaattaattaagtgtatgtgagagacaggagggaacct 36370339  T
Q  101 tgtctgattgattatattatatatgaatctcatatggatccaaatacgtccccctatatattgatgagaggtttatttctaagttttcaccttatacact 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36370340 tgtctgattgattatattatatatgaatctcatatggatccaaataagtccccctatatattgatgagaggtttatttctaagttttcaccttatacact 36370439  T
Q  201 aaacagcttcgtttgaattctattttgtacctgcttccacaagtgttgtttactgtataactgattattttgatgtgtaccaagttaacataattcat 298  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36370440 aaacagcttcgtttgaatattattttgtacctgcttccacaagtgttgtttactgtataactgattattttgatgtgtaccaagttaacataattcat 36370537  T

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