View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2312_high_51 (Length: 297)

Name: NF2312_high_51
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2312_high_51
NF2312_high_51
[»] chr8 (2 HSPs)
chr8 (3-282)||(27228378-27228657)
chr8 (3-282)||(27224187-27224454)
[»] chr3 (1 HSPs)
chr3 (3-280)||(19665209-19665480)
[»] chr1 (7 HSPs)
chr1 (147-280)||(48617853-48617986)
chr1 (140-277)||(48653462-48653599)
chr1 (141-280)||(11547574-11547713)
chr1 (154-282)||(48640256-48640384)
chr1 (156-282)||(48585685-48585811)
chr1 (3-85)||(11547442-11547518)
chr1 (61-102)||(48661815-48661856)


Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 3 - 282
Target Start/End: Original strand, 27228378 - 27228657
Alignment:
Q  3 acccaaggaagaaaaggattgtttacaatacaagaaatcggtgtatttgactcatcagcagcatgattcttgatcatttgagaaagaaactttttcccaa 102  Q
    ||||| |||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27228378 acccatggaagaaaaggattgtttatgatacaagaaatcagtgtatttgactcatcagcagcatgattcttgatcatttgagaaagaaactttttcccaa 27228477  T
Q  103 cgagctcgaggtgtggtgagtaggtagtaaggcttgttctaatgggatcatcatctgataaaccgtcgtcaaagaactcgaatgcgagagaaccattacc 202  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  27228478 cgagctcgaggtgtggtaagtaggtagtaaggcttgctctaatgggatcatcatctgataaaccgtcttcaaagaactcgaatgcgagagaaccattacc 27228577  T
Q  203 aactggaatgactgatttatcaatgatgttgttaacagttctcaattctctgccagctttctctgttgtgatgaagataa 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  27228578 aactggaatgactgatttatcaatgatgttgttaacagttctcaactctctgccagctttctcagttgtgatgaagataa 27228657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 3 - 282
Target Start/End: Original strand, 27224187 - 27224454
Alignment:
Q  3 acccaaggaagaaaaggattgtttacaatacaagaaatcggtgtatttgactcatcagcagcatgattcttgatcatttgagaaagaaactttttcccaa 102  Q
    ||||| |||||||||||||||||||  ||||||||||||||||||||||||||||            |||||||||||||||||||||||| ||||||||    
T  27224187 acccatggaagaaaaggattgtttatgatacaagaaatcggtgtatttgactcat------------tcttgatcatttgagaaagaaactgtttcccaa 27224274  T
Q  103 cgagctcgaggtgtggtgagtaggtagtaaggcttgttctaatgggatcatcatctgataaaccgtcgtcaaagaactcgaatgcgagagaaccattacc 202  Q
    | ||||||||||||||| ||||||||||  | ||||||||||||||||||||||||||||||||||| ||||||||||  |||| |||||||||||||||    
T  27224275 caagctcgaggtgtggtaagtaggtagtttgacttgttctaatgggatcatcatctgataaaccgtcatcaaagaactgaaatgtgagagaaccattacc 27224374  T
Q  203 aactggaatgactgatttatcaatgatgttgttaacagttctcaattctctgccagctttctctgttgtgatgaagataa 282  Q
    ||||||||||||| |||| ||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27224375 aactggaatgactaatttttcagtgatattgttaacagttctcaattctttgccagctttctctgttgtgatgaagataa 27224454  T

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Target: chr3 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 3 - 280
Target Start/End: Complemental strand, 19665480 - 19665209
Alignment:
Q  3 acccaaggaagaaaaggattgtttacaatacaagaaatcggtgtatttgactcatcagcagcatgattcttgatcatttgagaaagaaactttttcccaa 102  Q
    ||||| |||||||||||||||||||  || |||||||| ||| | |||||||||| |      |||||||| ||||||||||||||||||||| ||||||    
T  19665480 acccatggaagaaaaggattgtttatgatgcaagaaataggtttgtttgactcatta------tgattcttaatcatttgagaaagaaactttgtcccaa 19665387  T
Q  103 cgagctcgaggtgtggtgagtaggtagtaaggcttgttctaatgggatcatcatctgataaaccgtcgtcaaagaactcgaatgcgagagaaccattacc 202  Q
    | ||||| || |||| ||||||   |  ||| |||| |||||||||||||||||||  |||||| || |||||||| | |||   ||||||||||| |||    
T  19665386 caagctcaagctgtgttgagtatccaccaagacttgctctaatgggatcatcatcttctaaaccatcatcaaagaagtggaaaatgagagaaccatcacc 19665287  T
Q  203 aactggaatgactgatttatcaatgatgttgttaacagttctcaattctctgccagctttctctgttgtgatgaagat 280  Q
     | |||| ||| |||||| | | |||||||||||||||||  ||  ||| |||||||||||||||| |||||||||||    
T  19665286 tattggagtgagtgatttgtgagtgatgttgttaacagtttgcatgtctttgccagctttctctgtagtgatgaagat 19665209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 280
Target Start/End: Complemental strand, 48617986 - 48617853
Alignment:
Q  147 ggatcatcatctgataaaccgtcgtcaaagaactcgaatgcgagagaaccattaccaactggaatgactgatttatcaatgatgttgttaacagttctca 246  Q
    |||| |||||||  |||||| || || |||||||| || |  |||||||||| ||||| || | ||| |||||| |||||||| |||||||||||||| |    
T  48617986 ggatgatcatcttctaaaccatcatctaagaactcaaaagtaagagaaccatcaccaattgaagtgagtgatttttcaatgatattgttaacagttctta 48617887  T
Q  247 attctctgccagctttctctgttgtgatgaagat 280  Q
      ||| ||||||||||||||||||||||||||||    
T  48617886 tgtctttgccagctttctctgttgtgatgaagat 48617853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 140 - 277
Target Start/End: Original strand, 48653462 - 48653599
Alignment:
Q  140 tctaatgggatcatcatctgataaaccgtcgtcaaagaactcgaatgcgagagaaccattaccaactggaatgactgatttatcaatgatgttgttaaca 239  Q
    |||||| ||||||||||||  |||||  || ||||||||||| || | ||| ||||||| ||||| |||| ||| |||||| ||||||||||||||||||    
T  48653462 tctaataggatcatcatcttctaaacaatcatcaaagaactcaaaagtgagtgaaccatcaccaattggagtgaatgatttttcaatgatgttgttaaca 48653561  T
Q  240 gttctcaattctctgccagctttctctgttgtgatgaa 277  Q
    ||||| |  ||| | |||||| | ||||||||||||||    
T  48653562 gttcttatgtcttttccagctctttctgttgtgatgaa 48653599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 141 - 280
Target Start/End: Original strand, 11547574 - 11547713
Alignment:
Q  141 ctaatgggatcatcatctgataaaccgtcgtcaaagaactcgaatgcgagagaaccattaccaactggaatgactgatttatcaatgatgttgttaacag 240  Q
    ||||| ||||||||||||  |||||| || ||||||||||| || | ||||||||||||||| | ||   |||||||||| |||| |||||||||||| |    
T  11547574 ctaataggatcatcatcttgtaaaccatcatcaaagaactcaaaagtgagagaaccattacctattgatgtgactgatttttcaacgatgttgttaaccg 11547673  T
Q  241 ttctcaattctctgccagctttctctgttgtgatgaagat 280  Q
    ||   |  ||| |||||||||||| |||||||||||||||    
T  11547674 tttgtatgtctttgccagctttctttgttgtgatgaagat 11547713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 282
Target Start/End: Original strand, 48640256 - 48640384
Alignment:
Q  154 catctgataaaccgtcgtcaaagaactcgaatgcgagagaaccattaccaactggaatgactgatttatcaatgatgttgttaacagttctcaattctct 253  Q
    |||||| |||||| ||||||||||||||||| |||| || ||||| ||||| |||| |  || |||| ||||||||||||||| ||| || ||  | | |    
T  48640256 catctggtaaaccatcgtcaaagaactcgaaagcgaaagtaccatcaccaattggagttgctaatttgtcaatgatgttgttagcagctcgcatgttttt 48640355  T
Q  254 gccagctttctctgttgtgatgaagataa 282  Q
    ||||||  ||||||||||| |||||||||    
T  48640356 gccagccgtctctgttgtggtgaagataa 48640384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 282
Target Start/End: Original strand, 48585685 - 48585811
Alignment:
Q  156 tctgataaaccgtcgtcaaagaactcgaatgcgagagaaccattaccaactggaatgactgatttatcaatgatgttgttaacagttctcaattctctgc 255  Q
    |||| |||||| || |||||||||||||| |||| || ||||| ||||| |||| |  || |||| ||||||||||||||| ||| || ||  | | |||    
T  48585685 tctggtaaaccatcatcaaagaactcgaaagcgaaagtaccatcaccaattggagttgctaatttgtcaatgatgttgttagcagctcgcatgtttttgc 48585784  T
Q  256 cagctttctctgttgtgatgaagataa 282  Q
    ||||  ||||||||||| |||||||||    
T  48585785 cagccgtctctgttgtggtgaagataa 48585811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 85
Target Start/End: Original strand, 11547442 - 11547518
Alignment:
Q  3 acccaaggaagaaaaggattgtttacaatacaagaaatcggtgtatttgactcatcagcagcatgattcttgatcatttgaga 85  Q
    |||||||||| ||||||||||||||  ||||||||||| ||| | |||||||      || ||||||||||||||||||||||    
T  11547442 acccaaggaacaaaaggattgtttatgatacaagaaattggtttgtttgact------caacatgattcttgatcatttgaga 11547518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 48661815 - 48661856
Alignment:
Q  61 cagcatgattcttgatcatttgagaaagaaactttttcccaa 102  Q
    ||||||||||||||||||||||||||| ||||| | ||||||    
T  48661815 cagcatgattcttgatcatttgagaaacaaactgtctcccaa 48661856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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