View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2312_high_54 (Length: 282)
Name: NF2312_high_54
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_high_54 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 5301944 - 5301678
Alignment:
| Q |
1 |
tggtgcagaaatgtttgggatgagatggtttttatatgaagagagtagtgtgcatattggagggtagctgaacataacatcacgtgtttgactaaaaccc |
100 |
Q |
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| T |
5301944 |
tggtgcagaaatgtttgggatgagatggtttttatatgaagagagtagtgtgcatattggagggtagctgaacat-----catgtgtttgactaaaactc |
5301850 |
T |
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| Q |
101 |
ttaacatcatgcaaattttattttatattcaatataaacgtcgggtaccaataatatatataaatataatggctggctggctgctttgtccattacttga |
200 |
Q |
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| T |
5301849 |
ttaacatcatgcaaattttattttatattcaatataaacgtcgggtaccaataatacatataa--tggctggctggctggctgctttgtccattacttga |
5301752 |
T |
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| Q |
201 |
ccccgttggagtttggtgggaaataccccgcgtgtctttgaagatcctcttttgtccaacccttttttcatttc |
274 |
Q |
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| T |
5301751 |
ccctgttggagtttggtgggaaataccccgcgtgtctttgaagatcctcttttgtccaacccttttttcatttc |
5301678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 5290371 - 5290607
Alignment:
| Q |
1 |
tggtgcagaaatgtttgggatgagatggtttttatatgaagagagtagtgtgcatattggagggtagctgaacataacatcacgtgtttgactaaaaccc |
100 |
Q |
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| T |
5290371 |
tggtgcagaaatgtttgggatgagatggtttttatatgaagagagtagtgtgcatattggagggtagctgaacataacatcacgtgtttgactaaaactc |
5290470 |
T |
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| Q |
101 |
ttaacatcatgcaaattttattttatattcaatataaacgtcgggtaccaataatatatataaatataatggctggctggctgctttgtccattacttga |
200 |
Q |
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| T |
5290471 |
ttaacatcatgcaaattttattttatattcaatataaacgtcgggtaccaataatat------atataatggctggctggctgctttgtcca-tacttga |
5290563 |
T |
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| Q |
201 |
ccccgttggagtttggtgggaaataccccgcgtgtctttgaaga |
244 |
Q |
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| T |
5290564 |
ccctgttggtgtttggtgggaaataccccgcatttctttgaaga |
5290607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 5283759 - 5283668
Alignment:
| Q |
1 |
tggtgcagaaatgtttgggatgagatggtttttatatgaagagagtagtgtgcatattggagggtagctgaacataacatcacgtgtttgac |
92 |
Q |
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| T |
5283759 |
tggtgcaaagatatttggggtgagatggtttttatatgaagagagtagagtgcatattggagggtagctgaacataatatcacgtgtttgac |
5283668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 170 - 253
Target Start/End: Complemental strand, 5283644 - 5283561
Alignment:
| Q |
170 |
tggctggctggctgctttgtccattacttgaccccgttggagtttggtgggaaataccccgcgtgtctttgaagatcctctttt |
253 |
Q |
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| T |
5283644 |
tggctggatgactgctttgtccatgacttgaccatgttggagtttggtgggaaacaccccgcatgtctttgaagaccctctttt |
5283561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 176 - 241
Target Start/End: Complemental strand, 5309458 - 5309393
Alignment:
| Q |
176 |
gctggctgctttgtccattacttgaccccgttggagtttggtgggaaataccccgcgtgtctttga |
241 |
Q |
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| T |
5309458 |
gctggctgcgttgtccatgacttgaccctgttggagtttggtgggaaatgcccagcatgtctttga |
5309393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 270
Target Start/End: Complemental strand, 5314220 - 5314159
Alignment:
| Q |
209 |
gagtttggtgggaaataccccgcgtgtctttgaagatcctcttttgtccaacccttttttca |
270 |
Q |
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| T |
5314220 |
gagttaggtgggagataccccgcatgtctttgaagaccctccttggtctaaccattttttca |
5314159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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