View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2312_high_59 (Length: 274)
Name: NF2312_high_59
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_high_59 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 9 - 274
Target Start/End: Original strand, 3341234 - 3341499
Alignment:
| Q |
9 |
gattatacttggagccatgcagtgatatctgatgaaactcacaaattacttaaaacaaattgtgaatttaatagcagtgaagatatattgagtaaggatg |
108 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3341234 |
gattatgcttggagccatgcagtgatatctgatgaaactcacaaattacttaaaacaaattgtgaatttaaaagcagtgaagatatattgagtaaggatg |
3341333 |
T |
|
| Q |
109 |
atgtatgtaataaaggattagatgaaatgttcaagcagtacaatgaaattgatatctacagtctttacacccctacttgcttagccaacaaggggatttc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
3341334 |
atgtatgtaataaaggattagatgaaatgttcaagcagtacaatgaaattgatatctacagtctctacacccctacttgcttagccaacaaggggatttc |
3341433 |
T |
|
| Q |
209 |
aaaaccaatgcaaaaggttatgaagcgttcatcaaacaaagacatggtgagattagaaaattttat |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3341434 |
aaaaccaatgcaaaaggttatgaagcgttcatcaaacaaagacatggtgagattagaaaattttat |
3341499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 3333503 - 3333540
Alignment:
| Q |
9 |
gattatacttggagccatgcagtgatatctgatgaaac |
46 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
3333503 |
gattatgcttggagtcatgcagtgatatctgatgaaac |
3333540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 8349318 - 8349358
Alignment:
| Q |
129 |
gatgaaatgttcaagcagtacaatgaaattgatatctacag |
169 |
Q |
| |
|
|||||| || |||| |||||||||||||||||||||||||| |
|
|
| T |
8349318 |
gatgaagtgctcaaacagtacaatgaaattgatatctacag |
8349358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 42820303 - 42820263
Alignment:
| Q |
129 |
gatgaaatgttcaagcagtacaatgaaattgatatctacag |
169 |
Q |
| |
|
|||||| || |||| |||||||||||||||||||||||||| |
|
|
| T |
42820303 |
gatgaagtgctcaaacagtacaatgaaattgatatctacag |
42820263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 35793881 - 35793837
Alignment:
| Q |
9 |
gattatacttggagccatgcagtgatatctgatgaaactcacaaa |
53 |
Q |
| |
|
|||||| | ||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
35793881 |
gattatgcctggagtcatgctgtgatatctgatgaaactcacaaa |
35793837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University