View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2312_high_70 (Length: 254)
Name: NF2312_high_70
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_high_70 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 15)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 4845615 - 4845866
Alignment:
| Q |
1 |
tatgctttcattaacggaatcgaagttgtgtcgatgccttcttttctctattacacaaacccagatgacctaaattattatttcaaattaattggctttg |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4845615 |
tatgctttcgttaacggaatcgaagttgtgtcgatgccttcttttctctattacacaaacccagatgacttaaattattatttcaaattaattggctttg |
4845714 |
T |
|
| Q |
101 |
acaacagcgaatacgaaattcgtaatgataaagctttggagatggtttatagagtcaacgttggtcaaaatcaagttccaccaaaccaagatacaggtat |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||| | ||||||||||| |
|
|
| T |
4845715 |
acaacagagaatacgaaattcgtaatgataaagctttggagatggtttatagagtcaatgttggtgaaaatcaagttcaaccaagtgatgatacaggtat |
4845814 |
T |
|
| Q |
201 |
gtttcgtaattgggacagtgattttcctctttacttggagaaagaatatcca |
252 |
Q |
| |
|
|||||| |||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
4845815 |
gtttcgcaattgggacaatgattttcctcgttacttggagaaagaatatcca |
4845866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 4711675 - 4711926
Alignment:
| Q |
1 |
tatgctttcattaacggaatcgaagttgtgtcgatgccttcttttctctattacacaaacccagatgacctaaattattatttcaaattaattggctttg |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||| |||||| ||| || ||| |||| | ||| ||||| |
|
|
| T |
4711675 |
tatgctttcattaacggaatcgaaattgtgtctatgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgactttg |
4711774 |
T |
|
| Q |
101 |
acaacagcgaatacgaaattcgtaatgataaagctttggagatggtttatagagtcaacgttggtcaaaatcaagttccaccaaaccaagatacaggtat |
200 |
Q |
| |
|
|||||| |||||| |||||| ||| || ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4711775 |
acaacacggaataccaaattcataacgacaaagctttggaaatggtatatagagtcaacgttggtcaaaatcaagttccaccaaaccaagatacaggtat |
4711874 |
T |
|
| Q |
201 |
gtttcgtaattgggacagtgattttcctctttacttggagaaagaatatcca |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
4711875 |
gtttcgtaattgggacagtgattttcctctttacctggaaaaagaatatcca |
4711926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 4644199 - 4643949
Alignment:
| Q |
1 |
tatgctttcattaacggaatcgaagttgtgtcgatgccttcttttctctattacacaaacc-cagatgacctaaattattatttcaaattaattggcttt |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||| | ||||| | |||| ||| ||||| | |
|
|
| T |
4644199 |
tatgctttcattaacggaatcgaagttgtgtctatgccttcttttctctattacacaaacctcag-tgaccaagattatcgtatcaagttagatggctct |
4644101 |
T |
|
| Q |
100 |
gacaacagcgaatacgaaattcgtaatgataaagctttggagatggtttatagagtcaacgttggtcaaaatcaagttccaccaaaccaagatacaggta |
199 |
Q |
| |
|
|| | | |||| |||||| |||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
4644100 |
gaagatataccataccaaattcttaatgacaaagctttggagatggtttatagagtcaacgttggtcgaattcaagttccaccaaaccaagatacaggta |
4644001 |
T |
|
| Q |
200 |
tgtttcgtaattgggacagtgattttcctctttacttggagaaagaatatcc |
251 |
Q |
| |
|
|||||||||||||||||| ||||| ||||| ||||||||||||| ||||||| |
|
|
| T |
4644000 |
tgtttcgtaattgggacaatgattatcctcgttacttggagaaacaatatcc |
4643949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 4815867 - 4816111
Alignment:
| Q |
1 |
tatgctttcattaacggaatcgaagttgtgtcgatgccttcttttctctattacacaaacc-cagatgacctaaattattatttcaaattaattggcttt |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||| | ||||| | |||| ||| ||| | | |
|
|
| T |
4815867 |
tatgctttcattaacggaatcgaagttgtgtctatgccttcttttctctattacacaaacctcag-tgaccaagattatcgtatcaagttacctggttct |
4815965 |
T |
|
| Q |
100 |
gacaacagcgaatacgaaattcgtaatgataaagctttggagatggtttatagagtcaacgttggtcaaaatcaagttccaccaaaccaagatacaggta |
199 |
Q |
| |
|
||||||| |||||| || ||| ||| | |||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
4815966 |
gacaacacggaataccaagttcttaacaacaaagctttagagacggtttatagagtcaacgttggtcaaaatcaagttccagcaaaccaagatacaggca |
4816065 |
T |
|
| Q |
200 |
tgtttcgtaattgggacagtgattttcctctttacttggagaaaga |
245 |
Q |
| |
|
|||||||||||||||||| ||||| ||||| ||||||||||||||| |
|
|
| T |
4816066 |
tgtttcgtaattgggacaatgattctcctcgttacttggagaaaga |
4816111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 4783438 - 4783682
Alignment:
| Q |
1 |
tatgctttcattaacggaatcgaagttgtgtcgatgccttcttttctctattacacaaacc-cagatgacctaaattattatttcaaattaattggcttt |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||| | ||||| | |||| ||| ||| ||| |
|
|
| T |
4783438 |
tatgctttcattaacggaatcgaagttgtgtctatgccttcttttctctattacacaaacctcag-tgaccaagattatcttatcaatttacctggtttt |
4783536 |
T |
|
| Q |
100 |
gacaacagcgaatacgaaattcgtaatgataaagctttggagatggtttatagagtcaacgttggtcaaaatcaagttccaccaaaccaagatacaggta |
199 |
Q |
| |
|
||||||| || || || ||| ||| | |||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
4783537 |
gacaacacggattatcaagttcttaactacaaagctttagagacggtttatagagtcaacgttggtcaaaatcaagttccagcaaaccaagatacaggca |
4783636 |
T |
|
| Q |
200 |
tgtttcgtaattgggacagtgattttcctctttacttggagaaaga |
245 |
Q |
| |
|
|||||||||||||||||| ||||| ||||| ||||||||||||||| |
|
|
| T |
4783637 |
tgtttcgtaattgggacaatgattctcctcgttacttggagaaaga |
4783682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 4637349 - 4637105
Alignment:
| Q |
1 |
tatgctttcattaacggaatcgaagttgtgtcgatgccttcttttctctattacacaaacccagatgacctaaattattatttcaaattaattggctttg |
100 |
Q |
| |
|
|||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||| |||||| ||||| ||| | ||| || | |
|
|
| T |
4637349 |
tatgcttttattaacgggatcgaagttgtgtcaatgccttcttttctctattacacaaacctcaatgacccaaattactatttgaaaccagttgactcag |
4637250 |
T |
|
| Q |
101 |
acaacagcgaatacgaaattcgtaatgataaagctttggagatggtttatagagtcaacgttggtcaaaatcaagttccaccaaaccaagatacaggtat |
200 |
Q |
| |
|
| ||| |||||| ||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
4637249 |
agtacacggaataccgaattcataaagacaaagctttggagatggtttatagagtcaacgttggtcaaaatcaagttccaccaagtgatgatacaggtat |
4637150 |
T |
|
| Q |
201 |
gtttcgtaattgggacagtgattttcctctttacttggagaaaga |
245 |
Q |
| |
|
|||||| ||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
4637149 |
gtttcgcaattggggcaatgattttcctctttacttggagaaaga |
4637105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 4673195 - 4672944
Alignment:
| Q |
1 |
tatgctttcattaacggaatcgaagttgtgtcgatgccttcttttctctattacacaaacc-cagatgacctaaattattatttcaaattaattggcttt |
99 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||| ||||| ||||||| |||| |||| | ||| ||| |
|
|
| T |
4673195 |
tatgctttcattaacggaatcgaaattgtgtcaatgccttcttttctctattacacaaacctcag-tgacccaaattatcatttgaaatcacttgactta |
4673097 |
T |
|
| Q |
100 |
gacaacagcgaatacgaaattcgtaatgataaagctttggagatggtttatagagtcaacgttggtcaaaatcaagttccaccaaaccaagatacaggta |
199 |
Q |
| |
|
||||||| |||||| |||||| ||| || ||||||||||| |||||||||||||||||||||||| ||| |||||||||||| | ||||| |||| |
|
|
| T |
4673096 |
gacaacacggaataccaaattcataacgaaaaagctttggaaatggtttatagagtcaacgttggtgaaagtcaagttccaccgggtgacgatactggta |
4672997 |
T |
|
| Q |
200 |
tgtttcgtaattgggacagtgattttcctctttacttggagaaagaatatcca |
252 |
Q |
| |
|
|||||||||||||||||| |||||||| | ||||||||||||| |||||||| |
|
|
| T |
4672996 |
tgtttcgtaattgggacaatgattttcatggttacttggagaaacaatatcca |
4672944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 4696793 - 4697044
Alignment:
| Q |
1 |
tatgctttcattaacggaatcgaagttgtgtcgatgccttcttttctctattacacaaacc-cagatgacctaaattattatttcaaattaattggcttt |
99 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||| ||||| ||| ||| |||| | || | ||| ||| |
|
|
| T |
4696793 |
tatgctttcattaacggaatagaagttgtgtcaatgccttcttttctctattacacaaacctcag-tgacccaaaatatcatttgatatcacttgactta |
4696891 |
T |
|
| Q |
100 |
gacaacagcgaatacgaaattcgtaatgataaagctttggagatggtttatagagtcaacgttggtcaaaatcaagttccaccaaaccaagatacaggta |
199 |
Q |
| |
|
|||||||| || ||| || ||| ||| || ||||| || |||| ||||||||||||||| || ||| |||||||||||||||||||||||||| |||| |
|
|
| T |
4696892 |
gacaacagggactaccaagttcttaacgacaaagcgttagagacggtttatagagtcaatgtgggtggcaatcaagttccaccaaaccaagatactggta |
4696991 |
T |
|
| Q |
200 |
tgtttcgtaattgggacagtgattttcctctttacttggagaaagaatatcca |
252 |
Q |
| |
|
|||||||||| ||||||| ||||||||||| ||||||||||||| |||||||| |
|
|
| T |
4696992 |
tgtttcgtaactgggacaatgattttcctcgttacttggagaaacaatatcca |
4697044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 3 - 252
Target Start/End: Complemental strand, 4667431 - 4667182
Alignment:
| Q |
3 |
tgctttcattaacggaatcgaagttgtgtcgatgccttcttttctctattacacaaacc-cagatgacctaaattattatttcaaattaattggctttga |
101 |
Q |
| |
|
||||||||| |||||||| || ||||||| ||||| |||||||||||||||||||||| ||| ||||| ||||||| |||| | |||| ||| |||||| |
|
|
| T |
4667431 |
tgctttcatcaacggaattgagattgtgtctatgccgtcttttctctattacacaaacctcag-tgacccaaattatcatttgacattacttgactttga |
4667333 |
T |
|
| Q |
102 |
caacagcgaatacgaaattcgtaatgataaagctttggagatggtttatagagtcaacgttggtcaaaatcaagttccaccaaaccaagatacaggtatg |
201 |
Q |
| |
|
|| || |||||| | |||| ||| | |||||| |||||| |||||||||||||| ||||||| ||| |||||||||||| | ||||| |||||| |
|
|
| T |
4667332 |
cagcaatgaataccatattcctaacaacaaagctatggagacggtttatagagtcagcgttggtgaaagtcaagttccacctggtgacgatactggtatg |
4667233 |
T |
|
| Q |
202 |
tttcgtaattgggacagtgattttcctctttacttggagaaagaatatcca |
252 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||| |||||||| |
|
|
| T |
4667232 |
tttcgtaattgggacaatgattttcctcgttacttggagaaacaatatcca |
4667182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 4864414 - 4864163
Alignment:
| Q |
1 |
tatgctttcattaacggaatcgaagttgtgtcgatgccttcttttctctattacacaaacccagatgacctaaattattatttcaaattaattggctttg |
100 |
Q |
| |
|
||||| |||||||| ||||| ||||| ||||| |||||||||||||| ||||||||||||| |||||| ||| |||||||| |||| | ||| ||||| |
|
|
| T |
4864414 |
tatgccttcattaatggaatagaagtcgtgtctatgccttcttttctatattacacaaacctcaatgacccaaaatattatttgaaatcacttgactttg |
4864315 |
T |
|
| Q |
101 |
acaacagcgaa-tacgaaattcgtaatgataaagctttggagatggtttatagagtcaacgttggtcaaaatcaagttccaccaaaccaagatacaggta |
199 |
Q |
| |
|
|||||| |||| ||| || ||| ||| || ||||| || |||| ||||||||||||||| || ||| ||| |||||||||||| | ||||| |||| |
|
|
| T |
4864314 |
acaaca-cgaactaccaagttcttaacgacaaagcgttagagacggtttatagagtcaatgtcggtgaaagtcaagttccaccgggtgatgatactggta |
4864216 |
T |
|
| Q |
200 |
tgtttcgtaattgggacagtgattttcctctttacttggagaaagaatatcca |
252 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||| |||||||| |
|
|
| T |
4864215 |
tgtttcgtaattgggacaatgattttcctcgttacttggagaaacaatatcca |
4864163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 145 - 252
Target Start/End: Complemental strand, 4631275 - 4631168
Alignment:
| Q |
145 |
gtttatagagtcaacgttggtcaaaatcaagttccaccaaaccaagatacaggtatgtttcgtaattgggacagtgattttcctctttacttggagaaag |
244 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||| | ||||||||||||||||| |||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
4631275 |
gtttatagagtcaacgctggtgaaaatcaagttccaccaaattatgatacaggtatgtttcgcaattgggacaatgattttcctcgttacttggagaaag |
4631176 |
T |
|
| Q |
245 |
aatatcca |
252 |
Q |
| |
|
|||||||| |
|
|
| T |
4631175 |
aatatcca |
4631168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 130 - 252
Target Start/End: Complemental strand, 4653883 - 4653761
Alignment:
| Q |
130 |
aaagctttggagatggtttatagagtcaacgttggtcaaaatcaagttccaccaaaccaagatacaggtatgtttcgtaattgggacagtgattttcctc |
229 |
Q |
| |
|
|||||| |||||| |||||||| |||||||||||| ||||||||||||||||||||| |||||| ||| |||||||||||||||| | |||| ||||| |
|
|
| T |
4653883 |
aaagctctggagacagtttatagtgtcaacgttggtgaaaatcaagttccaccaaacctagatactggtttgtttcgtaattgggataacgattatcctc |
4653784 |
T |
|
| Q |
230 |
tttacttggagaaagaatatcca |
252 |
Q |
| |
|
|||||| |||||| |||||||| |
|
|
| T |
4653783 |
gttacttagagaaacaatatcca |
4653761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 4653988 - 4653928
Alignment:
| Q |
1 |
tatgctttcattaacggaatcgaagttgtgtcgatgccttcttttctctattacacaaacc |
61 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
4653988 |
tatgctttcattaatggaattgaagttgtgtctatgccttcttttctctattactcaaacc |
4653928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 252
Target Start/End: Complemental strand, 4663294 - 4663232
Alignment:
| Q |
190 |
gatacaggtatgtttcgtaattgggacagtgattttcctctttacttggagaaagaatatcca |
252 |
Q |
| |
|
|||||||||||||||||| ||||||| | ||||| ||||| ||||||||||| |||||||||| |
|
|
| T |
4663294 |
gatacaggtatgtttcgttattgggaaaatgattctcctcgttacttggagatagaatatcca |
4663232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 4631416 - 4631364
Alignment:
| Q |
4 |
gctttcattaacggaatcgaagttgtgtcgatgccttcttttctctattacac |
56 |
Q |
| |
|
|||||||| |||||||| || ||||||| ||||||||||||||||||||||| |
|
|
| T |
4631416 |
gctttcatcaacggaattgagattgtgtctatgccttcttttctctattacac |
4631364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 18925345 - 18925596
Alignment:
| Q |
1 |
tatgctttcattaacggaatcgaagttgtgtcgatgccttcttttctctattacacaaacccagatgacctaaattattatttcaaattaattggctttg |
100 |
Q |
| |
|
||||||||||| |||||||| || | ||||| |||||||||||||||||||||||||||| ||||| |||| || |||| || ||| ||||| ||| |
|
|
| T |
18925345 |
tatgctttcatcaacggaattgagatcgtgtccatgccttcttttctctattacacaaacctcaatgactcaaatcatcatttaaagttacttggccttg |
18925444 |
T |
|
| Q |
101 |
acaacagcgaatacgaaattcgtaatgataaagctttggagatggtttatagagtcaacgttggtcaaaatcaagttccaccaaaccaagatacaggtat |
200 |
Q |
| |
|
| |||| ||||| |||| | | ||| |||| || |||| |||||||||||||| ||||||| | ||||||||||||| || | || |||||||| |
|
|
| T |
18925445 |
aaaacatgaaatacaaaatcagcagtgacaaagtgttagagacggtttatagagtcagcgttggtgataatcaagttccacgaagtaatgacacaggtat |
18925544 |
T |
|
| Q |
201 |
gtttcgtaattgggacagtgattttcctctttacttggagaaagaatatcca |
252 |
Q |
| |
|
||||||| ||||||||| |||||||||| ||||||||||||| |||||||| |
|
|
| T |
18925545 |
gtttcgttattgggacaacgattttcctcgttacttggagaaacaatatcca |
18925596 |
T |
|
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