View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2312_high_81 (Length: 248)
Name: NF2312_high_81
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_high_81 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 40428209 - 40427969
Alignment:
| Q |
1 |
ttgtaaacacaatccattaaatatgagcttctggttggggaattgcacttcatgcagctcctttttgaattactggaaatccagttccacataactttgg |
100 |
Q |
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| T |
40428209 |
ttgtaaacacaatccattaaatatgagcttctggttggggaattgtacttcatgcagctcctttttgaattactggaaatccagttccacataactttgg |
40428110 |
T |
|
| Q |
101 |
tgtccaataaaaagtataaaacattgaaatttcaaacttcaaccagaaatggatgaataacataatactcaggttgcttaggagtttctttcagctccat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40428109 |
tgtccaataaaaagtataaaacattgaaatttcaaacttcaaccagaaatggatgaataacataatactcaggttgcttaggagtttctttcagctccat |
40428010 |
T |
|
| Q |
201 |
gccgcagaaaaagagatgtagaatgaaacttttatcctttg |
241 |
Q |
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|| |||||||||||||||||||||||||||||||||||||| |
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| T |
40428009 |
gcagcagaaaaagagatgtagaatgaaacttttatcctttg |
40427969 |
T |
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