View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2312_high_86 (Length: 246)
Name: NF2312_high_86
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_high_86 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 12 - 246
Target Start/End: Original strand, 49861344 - 49861574
Alignment:
| Q |
12 |
atgaacctctgttcccaaaacctagtaaaaaggattaagaaactgatgaaagtacagtaacaacagaagcttcagcttcacaaataaataaa----ccga |
107 |
Q |
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| T |
49861344 |
atgatcctctgttcccaaaaccttgtaaaaaggattaagaaactgatgaaagtacagtaaca---gtagcttcagcttcacaaataaataaataaaccga |
49861440 |
T |
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| Q |
108 |
aacctactcactccaaccaaccaaaccaaaccaataatcgaagtaaccttcccattctcaattccaacaacattttactgtgccattcatttattctact |
207 |
Q |
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| T |
49861441 |
aacctactcactccaaccaacc-----aaaccaataatcgaagtaaccttcccattctcaattccaacaacattttactgtgccattcatttattctact |
49861535 |
T |
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| Q |
208 |
cagatgaattcgaacatggataatgaaagagaaatcgaa |
246 |
Q |
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| T |
49861536 |
cagatgaattcgaacatggataatgaaagagaaatcgaa |
49861574 |
T |
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