View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2312_high_9 (Length: 556)
Name: NF2312_high_9
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 11 - 539
Target Start/End: Original strand, 49766189 - 49766717
Alignment:
| Q |
11 |
cacagaagcaataccattagaattagcaactactccctttgatttaccttcacgttgagattcaactcttctgagagtacaatctccaaacccagttgaa |
110 |
Q |
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| T |
49766189 |
cacagaagcaataccattagaactagcaactactccctttgatttaccttcacgttgagattcaactcttctgagagtacaatctccaaacccagttgaa |
49766288 |
T |
|
| Q |
111 |
attctttcaaagaaatcaccagagaagcttctgctaccacatccaacagatctagatcttgaaactttacgttcaaaagaacctgtgttgttgctattag |
210 |
Q |
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| T |
49766289 |
attctttcaaagaaatcaccagagaagcttctgctaccacatccaacagatctagatcttgaaactttacgttcaaaagaacctgtgttgttgctattag |
49766388 |
T |
|
| Q |
211 |
gactgttannnnnnnnnnnnnnnnnaacaataacaatgtcgttctttcttcctaaagaagaacctgaacaacacttttccttaagcttagctgaagcagt |
310 |
Q |
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| T |
49766389 |
gactgttatcttcttcttcttcttcaacaataacaatgtcgttctttcttcctaaagaagaacctgaacaacacttttccttaagcttagctgaagcagt |
49766488 |
T |
|
| Q |
311 |
agtattactaaagctcttggaagaagttgaagattttgaagaatgatagagaaaagaccaaaacccatttctttttcttggactaaaatattcatcatct |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49766489 |
agtattactaaagctcttggaagaagttgaagattttgaagaatgatagagaaaagaccaaaacccatttctttttcttggactaaaatattcatcatct |
49766588 |
T |
|
| Q |
411 |
gcatcaaccatagagttactacctcttcttggtgttgcagttgatttgctacgtttcaaaatgatattagacgtcgtagcagatgcagaaacagaggttt |
510 |
Q |
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| T |
49766589 |
gcatcaaccatagagttactacctcttcttggtgttgcagttgatttgctacgtttcaaaatgatattagacgacgtagcagatgcagaaacagaggttt |
49766688 |
T |
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| Q |
511 |
tcttcttctttctcttagctaagagaaaa |
539 |
Q |
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| T |
49766689 |
tcttcttctttttcttagctaagagaaaa |
49766717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 57 - 183
Target Start/End: Complemental strand, 14138488 - 14138362
Alignment:
| Q |
57 |
ccttcacgttgagattcaactcttctgagagtacaatctccaaacccagttgaaattctttcaaagaaatcaccagagaagcttctgctaccacatccaa |
156 |
Q |
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||||||||||||||||| |||||||| | ||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
14138488 |
ccttcacgttgagattccactcttcttaaggtacaatctccaaacccagttgagattttctcaaagaaatcaccagagaagcttctgctaccacatccaa |
14138389 |
T |
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| Q |
157 |
cagatctagatcttgaaactttacgtt |
183 |
Q |
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| T |
14138388 |
cagatctagatcttgaaaccttacgtt |
14138362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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