View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2312_high_98 (Length: 237)

Name: NF2312_high_98
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2312_high_98
NF2312_high_98
[»] chr7 (5 HSPs)
chr7 (1-221)||(5290088-5290308)
chr7 (1-221)||(5302007-5302227)
chr7 (30-221)||(5309673-5309864)
chr7 (42-221)||(5283860-5284039)
chr7 (42-221)||(5314502-5314681)
[»] chr1 (3 HSPs)
chr1 (20-221)||(44128143-44128344)
chr1 (20-221)||(44132348-44132549)
chr1 (20-221)||(44140770-44140971)
[»] chr5 (6 HSPs)
chr5 (26-221)||(1491571-1491766)
chr5 (42-221)||(1504351-1504530)
chr5 (26-221)||(1481681-1481876)
chr5 (34-221)||(1477578-1477765)
chr5 (54-222)||(1496809-1496977)
chr5 (75-217)||(1485466-1485610)
[»] chr2 (1 HSPs)
chr2 (51-217)||(24165447-24165613)
[»] chr3 (2 HSPs)
chr3 (81-221)||(37863719-37863859)
chr3 (171-221)||(37859729-37859779)


Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 5290308 - 5290088
Alignment:
Q  1 agtactacattttatttttatttgataccaaagatatcaaaatggtgagtgtgtctgaaattcgtaaagctcaaagggcagaaggtcctgcaactatctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5290308 agtactacattttatttttatttgataccaaagatatcaaaatggtgagtgtgtctgaaattcgtaaagctcaaagggcagaaggtcctgcaactatctt 5290209  T
Q  101 agccattggcactgcaaatccggcaaattgtgttgaacaaagcacttatcctgatttttactttaaaattacaaatagtgaacacaaaactgaactcaaa 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5290208 agccattggcactgcaaatccagcaaattgtgttgaacaaagcacttatcctgatttttactttaaaattacaaatagtgaacacaaaactgaactcaaa 5290109  T
Q  201 gagaaatttcagcgcatgtgt 221  Q
    |||||||||||||||||||||    
T  5290108 gagaaatttcagcgcatgtgt 5290088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 5302007 - 5302227
Alignment:
Q  1 agtactacattttatttttatttgataccaaagatatcaaaatggtgagtgtgtctgaaattcgtaaagctcaaagggcagaaggtcctgcaactatctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5302007 agtactacattttatttttatttgataccaaagatatcaaaatggtgagtgtgtctgaaattcgtaaagctcaaagggcagaaggtcctgcaactatctt 5302106  T
Q  101 agccattggcactgcaaatccggcaaattgtgttgaacaaagcacttatcctgatttttactttaaaattacaaatagtgaacacaaaactgaactcaaa 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5302107 agccattggcactgcaaatccagcaaattgtgttgaacaaagcacttatcctgatttttactttaaaattacaaatagtgaacacaaaactgaactcaaa 5302206  T
Q  201 gagaaatttcagcgcatgtgt 221  Q
    |||||||||||||||||||||    
T  5302207 gagaaatttcagcgcatgtgt 5302227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 30 - 221
Target Start/End: Original strand, 5309673 - 5309864
Alignment:
Q  30 aaagatatcaaaatggtgagtgtgtctgaaattcgtaaagctcaaagggcagaaggtcctgcaactatcttagccattggcactgcaaatccggcaaatt 129  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| || |||||||| ||||||||||| |||||||    
T  5309673 aaagatatcaaaatggtgagtgtgtctgaaattcgtaatgctcaaagagcagaaggtcctgcaactattttggccattggtactgcaaatccagcaaatt 5309772  T
Q  130 gtgttgaacaaagcacttatcctgatttttactttaaaattacaaatagtgaacacaaaactgaactcaaagagaaatttcagcgcatgtgt 221  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||    
T  5309773 gtgttgaacaaagcacatatcctgatttttactttaaaatcacaaatagtgaacacaaaactgaacttaaggagaaatttcagcgcatgtgt 5309864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 42 - 221
Target Start/End: Original strand, 5283860 - 5284039
Alignment:
Q  42 atggtgagtgtgtctgaaattcgtaaagctcaaagggcagaaggtcctgcaactatcttagccattggcactgcaaatccggcaaattgtgttgaacaaa 141  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| ||||||||||| |||||||||||||||||||    
T  5283860 atggtgagtgtgtctgaaattcgtaaagctcaaagggcagaaggccctgcaaccatcttggccattgggactgcaaatccagcaaattgtgttgaacaaa 5283959  T
Q  142 gcacttatcctgatttttactttaaaattacaaatagtgaacacaaaactgaactcaaagagaaatttcagcgcatgtgt 221  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  5283960 gcacgtatcctgatttttactttaaaatcacaaacagtgaacacaaaactgaacttaaagagaaatttcagcgcatgtgt 5284039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 42 - 221
Target Start/End: Original strand, 5314502 - 5314681
Alignment:
Q  42 atggtgagtgtgtctgaaattcgtaaagctcaaagggcagaaggtcctgcaactatcttagccattggcactgcaaatccggcaaattgtgttgaacaaa 141  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||| || || |||||||| ||||||||||| |||||||||||||||||||    
T  5314502 atggtgagtgtgtctgaaattcgtaaggctcaaagagcagaaggtcctgcaaccattttggccattggtactgcaaatccagcaaattgtgttgaacaaa 5314601  T
Q  142 gcacttatcctgatttttactttaaaattacaaatagtgaacacaaaactgaactcaaagagaaatttcagcgcatgtgt 221  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  5314602 gcacatatcctgatttttactttaaaattacaaatagtgaacacaaagttgaactcaaagagaaatttcagcgcatgtgt 5314681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 44128143 - 44128344
Alignment:
Q  20 atttgataccaaagatatcaaaatggtgagtgtgtctgaaattcgtaaagctcaaagggcagaaggtcctgcaactatcttagccattggcactgcaaat 119  Q
    ||||| ||||||||||||||| ||||| ||||||||||||||||| || ||||||||||||||||| |||||||| || ||||||||||||||||||||     
T  44128143 atttgctaccaaagatatcaatatggttagtgtgtctgaaattcgcaatgctcaaagggcagaaggccctgcaaccattttagccattggcactgcaaac 44128242  T
Q  120 ccggcaaattgtgttgaacaaagcacttatcctgatttttactttaaaattacaaatagtgaacacaaaactgaactcaaagagaaatttcagcgcatgt 219  Q
    || || |||||||||||||||||||| ||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||| || |||||||    
T  44128243 ccagccaattgtgttgaacaaagcacatatcctgatttctacttcaaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgt 44128342  T
Q  220 gt 221  Q
    ||    
T  44128343 gt 44128344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 44132348 - 44132549
Alignment:
Q  20 atttgataccaaagatatcaaaatggtgagtgtgtctgaaattcgtaaagctcaaagggcagaaggtcctgcaactatcttagccattggcactgcaaat 119  Q
    ||||| ||||||||||||||| ||||| ||||||||||||||||| || ||||||||||||||||| |||||||| || ||||||||||||||||||||     
T  44132348 atttgctaccaaagatatcaatatggttagtgtgtctgaaattcgcaatgctcaaagggcagaaggccctgcaaccattttagccattggcactgcaaac 44132447  T
Q  120 ccggcaaattgtgttgaacaaagcacttatcctgatttttactttaaaattacaaatagtgaacacaaaactgaactcaaagagaaatttcagcgcatgt 219  Q
    || || |||||||||||||||||||| ||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||| || |||||||    
T  44132448 ccagccaattgtgttgaacaaagcacatatcctgatttctacttcaaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgt 44132547  T
Q  220 gt 221  Q
    ||    
T  44132548 gt 44132549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 44140770 - 44140971
Alignment:
Q  20 atttgataccaaagatatcaaaatggtgagtgtgtctgaaattcgtaaagctcaaagggcagaaggtcctgcaactatcttagccattggcactgcaaat 119  Q
    ||||| ||||||||||||||| ||||| ||||||||||||||||| || ||||||||||||||||| |||||||| || ||||||||||||||||||||     
T  44140770 atttgctaccaaagatatcaatatggttagtgtgtctgaaattcgcaatgctcaaagggcagaaggccctgcaaccattttagccattggcactgcaaac 44140869  T
Q  120 ccggcaaattgtgttgaacaaagcacttatcctgatttttactttaaaattacaaatagtgaacacaaaactgaactcaaagagaaatttcagcgcatgt 219  Q
    || || |||||||||||||||||||| ||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||| || |||||||    
T  44140870 ccagccaattgtgttgaacaaagcacatatcctgatttctacttcaaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgt 44140969  T
Q  220 gt 221  Q
    ||    
T  44140970 gt 44140971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 26 - 221
Target Start/End: Original strand, 1491571 - 1491766
Alignment:
Q  26 taccaaagatatcaaaatggtgagtgtgtctgaaattcgtaaagctcaaagggcagaaggtcctgcaactatcttagccattggcactgcaaatccggca 125  Q
    ||||||| ||| ||| ||||||||||| ||||||||||| || |||||||||||||||||||||||||| || || |||||||||||||||||||| |||    
T  1491571 taccaaaaataccaagatggtgagtgtatctgaaattcgcaaggctcaaagggcagaaggtcctgcaaccatattggccattggcactgcaaatccagca 1491670  T
Q  126 aattgtgttgaacaaagcacttatcctgatttttactttaaaattacaaatagtgaacacaaaactgaactcaaagagaaatttcagcgcatgtgt 221  Q
    || ||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| |||||||| |||||||||    
T  1491671 aactgtgttgaacaaagcacatatcctgatttttactttaaaatcacaaatagcgaacacaaaactgagctcaaagaaaaatttcaacgcatgtgt 1491766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 42 - 221
Target Start/End: Original strand, 1504351 - 1504530
Alignment:
Q  42 atggtgagtgtgtctgaaattcgtaaagctcaaagggcagaaggtcctgcaactatcttagccattggcactgcaaatccggcaaattgtgttgaacaaa 141  Q
    ||||||||||| ||||||||||| || ||||| || ||||||||||||||||| || || ||||||||||||||||||||  ||||||||||||||||||    
T  1504351 atggtgagtgtatctgaaattcgcaaggctcagagagcagaaggtcctgcaaccattttggccattggcactgcaaatccaccaaattgtgttgaacaaa 1504450  T
Q  142 gcacttatcctgatttttactttaaaattacaaatagtgaacacaaaactgaactcaaagagaaatttcagcgcatgtgt 221  Q
    |||| ||||||||||| ||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  1504451 gcacatatcctgatttctactttagaatcacaaacagtgaacacaaaactgaactcaaagagaaatttcaacgcatgtgt 1504530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 26 - 221
Target Start/End: Original strand, 1481681 - 1481876
Alignment:
Q  26 taccaaagatatcaaaatggtgagtgtgtctgaaattcgtaaagctcaaagggcagaaggtcctgcaactatcttagccattggcactgcaaatccggca 125  Q
    ||||||| ||| ||| ||||||||||| ||||||||||| || |||||||||||||||||||||||||| || || |||||||||||||||||||| |||    
T  1481681 taccaaaaataccaagatggtgagtgtatctgaaattcgcaaggctcaaagggcagaaggtcctgcaaccatattggccattggcactgcaaatccagca 1481780  T
Q  126 aattgtgttgaacaaagcacttatcctgatttttactttaaaattacaaatagtgaacacaaaactgaactcaaagagaaatttcagcgcatgtgt 221  Q
    || ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| || |||   ||||||||||| |||||||| |||||||||    
T  1481781 aactgtgttgaacaaagcacatatcctgatttttactttaaaatcacaaacagtgagcataaagtcgaactcaaagaaaaatttcaacgcatgtgt 1481876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 34 - 221
Target Start/End: Original strand, 1477578 - 1477765
Alignment:
Q  34 atatcaaaatggtgagtgtgtctgaaattcgtaaagctcaaagggcagaaggtcctgcaactatcttagccattggcactgcaaatccggcaaattgtgt 133  Q
    ||||||| ||||||||||| ||||||||||| || ||||| ||||||||||| ||||| || ||| | |||||||||||||||||||| || || |||||    
T  1477578 atatcaagatggtgagtgtatctgaaattcgcaaggctcagagggcagaaggccctgccaccatcatggccattggcactgcaaatccagccaactgtgt 1477677  T
Q  134 tgaacaaagcacttatcctgatttttactttaaaattacaaatagtgaacacaaaactgaactcaaagagaaatttcagcgcatgtgt 221  Q
    |||||||||||| ||||||||||||||||| ||||| ||||| ||||| ||||||  |||||| ||||| |||||||| |||||||||    
T  1477678 tgaacaaagcacatatcctgatttttacttcaaaatcacaaacagtgagcacaaagttgaacttaaagaaaaatttcaacgcatgtgt 1477765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 54 - 222
Target Start/End: Original strand, 1496809 - 1496977
Alignment:
Q  54 tctgaaattcgtaaagctcaaagggcagaaggtcctgcaactatcttagccattggcactgcaaatccggcaaattgtgttgaacaaagcacttatcctg 153  Q
    ||||||||||| |  ||||||||||||||||| ||| ||||||||||||| |||||||||||||||||  |||||||| ||||||||||||| |||||||    
T  1496809 tctgaaattcgaagggctcaaagggcagaaggccctacaactatcttagctattggcactgcaaatccaacaaattgtattgaacaaagcacatatcctg 1496908  T
Q  154 atttttactttaaaattacaaatagtgaacacaaaactgaactcaaagagaaatttcagcgcatgtgtt 222  Q
    || | || || | | | ||||| | ||| ||||| |||||| | ||| ||||||| |||||||| ||||    
T  1496909 atctctatttcagagtcacaaacaatgagcacaagactgaattaaaaaagaaattccagcgcatatgtt 1496977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 75 - 217
Target Start/End: Original strand, 1485466 - 1485610
Alignment:
Q  75 agggcagaaggtcctgcaactatcttagccattggcactgcaaatccggcaaattgtgttgaacaaagcacttatcctgatt--tttactttaaaattac 172  Q
    ||||||||||| |||||||  ||||| ||||| || |||||||||||  |||||||||||||||||||||| ||||||||||  | ||||| | |||  |    
T  1485466 agggcagaaggccctgcaatcatcttggccataggaactgcaaatccaccaaattgtgttgaacaaagcacatatcctgatttctatacttcagaatcgc 1485565  T
Q  173 aaatagtgaacacaaaactgaactcaaagagaaatttcagcgcat 217  Q
    |||||| || ||||| ||  |||||| ||||||||||||||||||    
T  1485566 aaatagcgagcacaagacgcaactcagagagaaatttcagcgcat 1485610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 51 - 217
Target Start/End: Complemental strand, 24165613 - 24165447
Alignment:
Q  51 gtgtctgaaattcgtaaagctcaaagggcagaaggtcctgcaactatcttagccattggcactgcaaatccggcaaattgtgttgaacaaagcacttatc 150  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||  |||| ||||||||||||||||| ||||    
T  24165613 gtgtctgaaattcgtaaggctcaaagggcagaaggccctgcaactatcttggccattggcactgcaaatccaccaaactgtgttgaacaaagcacatatc 24165514  T
Q  151 ctgatttttactttaaaattacaaatagtgaacacaaaactgaactcaaagagaaatttcagcgcat 217  Q
    ||||||| ||||||| | | ||||| || || ||||| |   |||||||||| |||||||| |||||    
T  24165513 ctgatttctactttagagtcacaaacagcgagcacaagatcaaactcaaagaaaaatttcaacgcat 24165447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 81 - 221
Target Start/End: Complemental strand, 37863859 - 37863719
Alignment:
Q  81 gaaggtcctgcaactatcttagccattggcactgcaaatccggcaaattgtgttgaacaaagcacttatcctgatttttactttaaaattacaaatagtg 180  Q
    ||||| ||||| ||| |||| || || ||||||||||||||   ||| |||||||| || || || |||||||| ||||||||    || ||||| ||||    
T  37863859 gaaggccctgccactgtcttcgcaataggcactgcaaatcctcaaaactgtgttgatcagagtacatatcctgacttttacttccgtatcacaaacagtg 37863760  T
Q  181 aacacaaaactgaactcaaagagaaatttcagcgcatgtgt 221  Q
    |||||||||||||||||| ||| ||||| ||||||||||||    
T  37863759 aacacaaaactgaactcagagaaaaattccagcgcatgtgt 37863719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 37859779 - 37859729
Alignment:
Q  171 acaaatagtgaacacaaaactgaactcaaagagaaatttcagcgcatgtgt 221  Q
    ||||| |||||||| || ||||| |||||||| ||||||||||||||||||    
T  37859779 acaaacagtgaacataagactgagctcaaagaaaaatttcagcgcatgtgt 37859729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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