View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2312_low_1 (Length: 801)

Name: NF2312_low_1
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2312_low_1
NF2312_low_1
[»] chr7 (2 HSPs)
chr7 (18-643)||(7798098-7798723)
chr7 (642-792)||(7798764-7798894)


Alignment Details
Target: chr7 (Bit Score: 565; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 18 - 643
Target Start/End: Original strand, 7798098 - 7798723
Alignment:
Q  18 aaaccaattatacacactggtctctgaaatctgcccgtgcttggttaaatcagctgttatctcctttatcttttccttacttggagtccccgtctcagct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7798098 aaaccaattatacacactggtctctgaaatctgcccgtgcttggttaaatcagctgttatctcctttatcttttccttacttggagtccccgtctcagct 7798197  T
Q  118 tcaaatattcgctccaaactttgaagttgcacaggtgttggtgtccaacgctgcctcagcctagtagaccctaaaaatcattattaaatgttgattacaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7798198 tcaaatattcgctccaaactttgaagttgcacaggtgttggtgtccaacgctgcctcagcctagtagaccctaaaaatcattattaaatgttgattacaa 7798297  T
Q  218 tttatttaatctattttaataatattcaactaaaacacattcgtaatataccaaaccgtaccaaagacccggttcataatattgaaccgggctccacccg 317  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7798298 tttatttaatctattttaataatattcaactaaaacacattcctaataaaccaaaccgtaccaaagacccggttcataatattgaaccgggctccacccg 7798397  T
Q  318 gttaactgtgataccgttgagaatgagtaactaaactacaaaactgtaacaaacttaccagtgagagtgagatcttgttgagaagataaggttttatgtg 417  Q
    ||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7798398 gttaactgtgatacctttgagaatgagtaactaaactacgaatctgtaacaaacttaccagtgagggtgagatcttgttgagaagataaggttttatgtg 7798497  T
Q  418 tttgaatgagttgttcagagattacagaataagctgcgatttgtttccgaagagtttcgacttgttcattggtcatcacattcacttgcatcattccaac 517  Q
    ||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  7798498 tttgaatgagttgctcagagattacagaataaactgctatttgtttccgaagagtttcaacttgttcattggtcatcacattcacttgcatcattccaac 7798597  T
Q  518 attcgcgttctgattaaaaccgttcctctgccactccatctctttctttttctgtaaaataaaaagcgattaatgattttcatttctatnnnnnnngtga 617  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||    
T  7798598 attcgcgttctgattaaaaccgttcctctgccactccatctctttctttttctgtaaaataaaaagcgattaatgattttcatttctataaaaaaagtga 7798697  T
Q  618 tctgtgagaagaagaaaccaatggtg 643  Q
    ||||||||||||||||||||||||||    
T  7798698 tctgtgagaagaagaaaccaatggtg 7798723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 642 - 792
Target Start/End: Original strand, 7798764 - 7798894
Alignment:
Q  642 tgatcaaaattctagtttctaacaactagggcatggatcagatcaatattcttctcaataaagatgaataagagttgtagttttgctctattaacaatga 741  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                    ||||||||||||    
T  7798764 tgatcaaaattctagtttctaacaactagggcatggatcagatcaatattcttctcaataaagatgaa--------------------tattaacaatga 7798843  T
Q  742 tcatagcataatgaagatgaataagagttgtatagttcttacttgatgatg 792  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7798844 tcatagcataatgaagatgaataagagttgtatagttcttacttgatgatg 7798894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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