View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2312_low_104 (Length: 239)
Name: NF2312_low_104
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_low_104 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 39364934 - 39364713
Alignment:
| Q |
1 |
tgactactatatatataaaccttttttcttgagttctattcttcttgcccaatttaaccttgaagtgtatattggagttgatgatacctttgaagtcaac |
100 |
Q |
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| T |
39364934 |
tgactactatatatataaaccttttttcttgagttctattcttcttccccaatttaaccttgaagtgtatattggagttgatgatacctttgaagtcaac |
39364835 |
T |
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| Q |
101 |
tagttccaggaaagattattcaactcaaaaatgattttctttgtaataaaaaagtggagatcgaggatgtcataagatgtacagttttcatttatatgct |
200 |
Q |
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| T |
39364834 |
tagtttgaggaaggattattcagctcaaaaatgattttctttgtaataaaaaattggagatcgaggatgtcataagatgtacagttttcatttatatgct |
39364735 |
T |
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| Q |
201 |
atgctattttctagtgaaactt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
39364734 |
atgctattttctagtgaaactt |
39364713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 126
Target Start/End: Original strand, 32313311 - 32313425
Alignment:
| Q |
14 |
tataaaccttttttct-tgagttctattcttcttgcccaatttaaccttgaagtgtatatt-ggagttgatgatacctttgaagtcaactagttccagga |
111 |
Q |
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||||||||||||||| || |||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||| || |
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| T |
32313311 |
tataaaccttttttccctgtgttctattcttcttgcccaatttaacgttgaagggtatattaggagttgatgatacctttgaagtcaactagtttgagct |
32313410 |
T |
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| Q |
112 |
aagattattcaactc |
126 |
Q |
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| T |
32313411 |
acgattattcaactc |
32313425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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