View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2312_low_105 (Length: 239)
Name: NF2312_low_105
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_low_105 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 2 - 239
Target Start/End: Original strand, 12925980 - 12926217
Alignment:
| Q |
2 |
agagattactattttccatcaaatttataaaggaaatttattcaaagttgttcaattcacactacttttccattagagtaatgaatttgtttattttacc |
101 |
Q |
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| T |
12925980 |
agagattactattttccatcaaatttataaaggaaatttattcaaagttgttcaattcacactacttttctattagagtaatgaatttgtttattttacc |
12926079 |
T |
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| Q |
102 |
ttaaatgccagtgtgttattatgattctgaggcataatttctttgtctccattatgatttggaacattgttgaaggttggaaatgagtaacatacttctc |
201 |
Q |
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| T |
12926080 |
ttcaatgccagtgtgttattatgattctgaggcataatttctttgtctccattatgatttggaacattgttgaaggttggaaatgagtaacatacttctc |
12926179 |
T |
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| Q |
202 |
ccttggatccttgactggttgcagactctccagcagct |
239 |
Q |
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| T |
12926180 |
ccttggatccttggctggatgaagactctccagaagct |
12926217 |
T |
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