View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2312_low_106 (Length: 238)
Name: NF2312_low_106
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_low_106 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 4356049 - 4356269
Alignment:
| Q |
18 |
aggactaggattacaagagaaaaatcctcaagttaccgagtttacagttacaaatggagatctcttggtttttgctactgaagaaaaagtttatagttgt |
117 |
Q |
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| T |
4356049 |
aggactaggattacaagagaaaaatcctcaagttaccgggtttacagttacaaatggagatatcttggtttttgctactgaagaaaaagtttatagttgt |
4356148 |
T |
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| Q |
118 |
ggtttgaatgaagaaagatttatgatggtagaggaaatagggcaacacaattgtcgattcaatcttcgtttgatctcttactcagacacatttcgttctt |
217 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4356149 |
ggtttgaatgaagaaagatttatgatggtcgaggaaatagggcaacacaattgtcgattcaatcttcgtttgatctcctactcagacacatttcgttctt |
4356248 |
T |
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| Q |
218 |
gtgggataaatgctgtgactt |
238 |
Q |
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||||||||||||||||||||| |
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| T |
4356249 |
gtgggataaatgctgtgactt |
4356269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 4674863 - 4674643
Alignment:
| Q |
18 |
aggactaggattacaagagaaaaatcctcaagttaccgagtttacagttacaaatggagatctcttggtttttgctactgaagaaaaagtttatagttgt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4674863 |
aggactaggattacaagagaaaaatcctcaagttaccgggtttacagttacaaatggagatatcttggtttttgctactgaagaaaaagtttatagttgt |
4674764 |
T |
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| Q |
118 |
ggtttgaatgaagaaagatttatgatggtagaggaaatagggcaacacaattgtcgattcaatcttcgtttgatctcttactcagacacatttcgttctt |
217 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
4674763 |
ggtttgaatgaagaaagatttatgatggtcgaggaaatagggcaacacaattgtcgattcaatcttcgtttgttctcctactcagacacatttcgttctt |
4674664 |
T |
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| Q |
218 |
gtgggataaatgctgtgactt |
238 |
Q |
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||||||||||||||||||||| |
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| T |
4674663 |
gtgggataaatgctgtgactt |
4674643 |
T |
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