View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2312_low_108 (Length: 237)

Name: NF2312_low_108
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2312_low_108
NF2312_low_108
[»] chr2 (10 HSPs)
chr2 (13-219)||(40797379-40797586)
chr2 (13-60)||(10664490-10664537)
chr2 (11-56)||(36547238-36547283)
chr2 (11-69)||(25274819-25274877)
chr2 (3-69)||(34903522-34903588)
chr2 (3-49)||(41939118-41939164)
chr2 (1-66)||(13947518-13947583)
chr2 (1-66)||(14088707-14088772)
chr2 (24-69)||(43106223-43106267)
chr2 (13-69)||(7640673-7640729)
[»] chr6 (9 HSPs)
chr6 (21-69)||(35110077-35110125)
chr6 (9-69)||(404174-404234)
chr6 (11-58)||(14515293-14515340)
chr6 (13-59)||(11713681-11713727)
chr6 (1-59)||(23507391-23507449)
chr6 (9-57)||(15291692-15291740)
chr6 (11-67)||(17829300-17829356)
chr6 (1-65)||(19554156-19554220)
chr6 (3-67)||(28046170-28046234)
[»] chr4 (13 HSPs)
chr4 (11-69)||(38416070-38416128)
chr4 (11-69)||(34595926-34595984)
chr4 (3-56)||(43179178-43179231)
chr4 (29-68)||(50112559-50112598)
chr4 (15-69)||(1657020-1657074)
chr4 (11-69)||(44670039-44670097)
chr4 (11-60)||(24785461-24785510)
chr4 (11-60)||(24822756-24822805)
chr4 (16-57)||(28311494-28311535)
chr4 (17-69)||(29568605-29568657)
chr4 (12-60)||(36479005-36479053)
chr4 (1-33)||(38470180-38470212)
chr4 (9-69)||(47806246-47806306)
[»] chr7 (12 HSPs)
chr7 (4-69)||(20151825-20151890)
chr7 (11-52)||(21164765-21164806)
chr7 (13-60)||(48837882-48837929)
chr7 (11-69)||(19793534-19793592)
chr7 (11-69)||(35142139-35142197)
chr7 (11-68)||(1120022-1120079)
chr7 (3-60)||(8237631-8237688)
chr7 (1-58)||(38553821-38553878)
chr7 (4-36)||(677395-677427)
chr7 (11-59)||(27068157-27068205)
chr7 (11-59)||(27210108-27210156)
chr7 (13-53)||(35396648-35396688)
[»] chr3 (9 HSPs)
chr3 (4-68)||(41087577-41087641)
chr3 (1-53)||(38221731-38221783)
chr3 (3-37)||(41258976-41259010)
chr3 (3-56)||(8139720-8139773)
chr3 (11-60)||(30200839-30200888)
chr3 (11-56)||(48376848-48376893)
chr3 (11-60)||(54230098-54230147)
chr3 (11-67)||(35191809-35191865)
chr3 (1-69)||(45096029-45096097)
[»] chr1 (12 HSPs)
chr1 (11-61)||(9872103-9872153)
chr1 (3-38)||(8210406-8210441)
chr1 (17-56)||(34599922-34599961)
chr1 (24-58)||(25524217-25524251)
chr1 (22-68)||(35527942-35527988)
chr1 (24-69)||(3157707-3157752)
chr1 (11-68)||(13135746-13135803)
chr1 (11-60)||(18056715-18056764)
chr1 (11-60)||(35337122-35337171)
chr1 (1-37)||(4302455-4302491)
chr1 (4-60)||(41974767-41974823)
chr1 (9-69)||(44068867-44068927)
[»] chr8 (6 HSPs)
chr8 (1-69)||(1244695-1244763)
chr8 (1-59)||(3889893-3889953)
chr8 (24-65)||(7016076-7016117)
chr8 (24-61)||(7404804-7404841)
chr8 (24-69)||(13284255-13284300)
chr8 (9-69)||(30071506-30071566)
[»] chr5 (8 HSPs)
chr5 (1-53)||(20114708-20114760)
chr5 (1-69)||(21657388-21657456)
chr5 (11-66)||(35773043-35773098)
chr5 (19-62)||(36868729-36868772)
chr5 (13-58)||(22745904-22745949)
chr5 (16-52)||(5243837-5243873)
chr5 (13-57)||(13547462-13547506)
chr5 (11-59)||(39143727-39143775)
[»] scaffold0734 (1 HSPs)
scaffold0734 (3-58)||(4342-4397)


Alignment Details
Target: chr2 (Bit Score: 124; Significance: 6e-64; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 13 - 219
Target Start/End: Original strand, 40797379 - 40797586
Alignment:
Q  13 ttggtaaggataatgcataatatatataaagtttgaggttcgaaccccaaacaccacnnnnnnnn-tacttattttattcttgttattagacgaagtagt 111  Q
    |||||||||| ||||||||||||||| || || | |||||||||  || ||||||||         |||||||||||||||||||||| |||||||||||    
T  40797379 ttggtaaggacaatgcataatatatacaaggtctaaggttcgaattccgaacaccacaaaaaaaaatacttattttattcttgttatttgacgaagtagt 40797478  T
Q  112 aataccactaaacacattgacacacacaagtacattttccgagtatgaatacatgtttaatctaacgataatgatattgtcattaagttaaattttacta 211  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |    
T  40797479 aataccactaagcacattgacacacacaagtacattttccgactatgaatatatgtttaatctaacgataatgatattgtcattaagttaaattttacca 40797578  T
Q  212 accatgat 219  Q
    ||||||||    
T  40797579 accatgat 40797586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 10664537 - 10664490
Alignment:
Q  13 ttggtaaggataatgcataatatatataaagtttgaggttcgaacccc 60  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||    
T  10664537 ttggtaagaataatgcataatatatacaaagtttgaggttcgaacccc 10664490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 36547283 - 36547238
Alignment:
Q  11 agttggtaaggataatgcataatatatataaagtttgaggttcgaa 56  Q
    ||||||||||||||||| |||||||||  |||||||||||||||||    
T  36547283 agttggtaaggataatgtataatatatgcaaagtttgaggttcgaa 36547238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 25274877 - 25274819
Alignment:
Q  11 agttggtaaggataatgcataatatatataaagtttgaggttcgaaccccaaacaccac 69  Q
    |||||||||| | |||||||||||||| ||| || || |||||||||||| ||||||||    
T  25274877 agttggtaagaacaatgcataatatatgtaaggtctggggttcgaaccccgaacaccac 25274819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 34903522 - 34903588
Alignment:
Q  3 cttagtttagttggtaaggataatgcataatatatataaagtttgaggttcgaaccccaaacaccac 69  Q
    ||||||| |||||||||||| | ||||||||||||  || || |||||||||||||||  |||||||    
T  34903522 cttagttcagttggtaaggacagtgcataatatatgcaaggtctgaggttcgaaccccggacaccac 34903588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 41939164 - 41939118
Alignment:
Q  3 cttagtttagttggtaaggataatgcataatatatataaagtttgag 49  Q
    ||||| |||||||||| |||||||||||||||||| ||| |||||||    
T  41939164 cttagcttagttggtagggataatgcataatatatgtaaggtttgag 41939118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 13947583 - 13947518
Alignment:
Q  1 aacttagtttagttggtaaggataatgcataatatatataaagtttgaggttcgaaccccaaacac 66  Q
    ||||||||||||||| || | ||| ||||||||| ||||||   |||||||||||||| |||||||    
T  13947583 aacttagtttagttgataggaatattgcataataaatataagagttgaggttcgaacctcaaacac 13947518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 14088772 - 14088707
Alignment:
Q  1 aacttagtttagttggtaaggataatgcataatatatataaagtttgaggttcgaaccccaaacac 66  Q
    ||||||||||||||| || | ||| ||||||||| ||||||   |||||||||||||| |||||||    
T  14088772 aacttagtttagttgataggaatattgcataataaatataagagttgaggttcgaacctcaaacac 14088707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 43106223 - 43106267
Alignment:
Q  24 aatgcataatatatataaagtttgaggttcgaaccccaaacaccac 69  Q
    ||||||||||||||||||||||||| |||||||| |||| ||||||    
T  43106223 aatgcataatatatataaagtttga-gttcgaactccaaccaccac 43106267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 7640673 - 7640729
Alignment:
Q  13 ttggtaaggataatgcataatatatataaagtttgaggttcgaaccccaaacaccac 69  Q
    |||||||||| ||| |||||||||| ||| |  |||||||||||||||| |||||||    
T  7640673 ttggtaaggacaatacataatatatgtaaggcctgaggttcgaaccccagacaccac 7640729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 35110077 - 35110125
Alignment:
Q  21 gataatgcataatatatataaagtttgaggttcgaaccccaaacaccac 69  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  35110077 gataatgcataatatatgtaaggtttgaggttcgaaccccaaacaccac 35110125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 404174 - 404234
Alignment:
Q  9 ttagttggtaaggataatgcataatatatataaagtttgaggttcgaaccccaaacaccac 69  Q
    |||||||||||||| ||||||||||||||  || ||  ||||||||||||||| |||||||    
T  404174 ttagttggtaaggacaatgcataatatatgcaatgtccgaggttcgaaccccagacaccac 404234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 14515340 - 14515293
Alignment:
Q  11 agttggtaaggataatgcataatatatataaagtttgaggttcgaacc 58  Q
    ||||| |||||| |||||||||||||||||||||||  ||||||||||    
T  14515340 agttgttaaggacaatgcataatatatataaagtttagggttcgaacc 14515293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 11713681 - 11713727
Alignment:
Q  13 ttggtaaggataatgcataatatatataaagtttgaggttcgaaccc 59  Q
    ||||||||||||||||||||||||||||| ||||  | |||||||||    
T  11713681 ttggtaaggataatgcataatatatataaggtttaggattcgaaccc 11713727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 23507449 - 23507391
Alignment:
Q  1 aacttagtttagttggtaaggataatgcataatatatataaagtttgaggttcgaaccc 59  Q
    ||||||||| |||||||||||| ||| ||||| |||| ||| ||||| |||||||||||    
T  23507449 aacttagttcagttggtaaggacaatacataaaatatgtaaggtttggggttcgaaccc 23507391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 15291740 - 15291692
Alignment:
Q  9 ttagttggtaaggataatgcataatatatataaagtttgaggttcgaac 57  Q
    |||||||||||||| |||| |||||||||  || |||||||||||||||    
T  15291740 ttagttggtaaggacaatgaataatatatgcaaggtttgaggttcgaac 15291692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 17829356 - 17829300
Alignment:
Q  11 agttggtaaggataatgcataatatatataaagtttgaggttcgaaccccaaacacc 67  Q
    ||||||||||||  |||||||||||||  |||||  |||||||||||||| ||||||    
T  17829356 agttggtaaggactatgcataatatatgcaaagtccgaggttcgaaccccgaacacc 17829300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 19554156 - 19554220
Alignment:
Q  1 aacttagtttagttggtaaggataatgcataatatatataaagtttgaggttcgaaccccaaaca 65  Q
    ||||||| ||||||||||| || ||||||||||||||  || ||||| | |||||||||| ||||    
T  19554156 aacttagcttagttggtaaagacaatgcataatatatgcaaggtttgtgattcgaaccccgaaca 19554220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 28046234 - 28046170
Alignment:
Q  3 cttagtttagttggtaaggataatgcataatatatataaagtttgaggttcgaaccccaaacacc 67  Q
    ||||||| ||||| ||| || ||||||||||||||  || |||||||||| ||||||| ||||||    
T  28046234 cttagttcagttgataaagacaatgcataatatatgcaaggtttgaggtttgaaccccgaacacc 28046170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 38416070 - 38416128
Alignment:
Q  11 agttggtaaggataatgcataatatatataaagtttgaggttcgaaccccaaacaccac 69  Q
    |||||||||||||||||||||||||||  || || ||||||||||| ||||||||||||    
T  38416070 agttggtaaggataatgcataatatatgcaaggtatgaggttcgaatcccaaacaccac 38416128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 34595984 - 34595926
Alignment:
Q  11 agttggtaaggataatgcataatatatataaagtttgaggttcgaaccccaaacaccac 69  Q
    |||||||||||| |||||||||||||| ||||||| | |||| |||||||| |||||||    
T  34595984 agttggtaaggacaatgcataatatatgtaaagttcggggtttgaaccccagacaccac 34595926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 43179178 - 43179231
Alignment:
Q  3 cttagtttagttggtaaggataatgcataatatatataaagtttgaggttcgaa 56  Q
    ||||||| |||||||||||| |||||||||||||| |||||| | |||||||||    
T  43179178 cttagttcagttggtaaggaaaatgcataatatatgtaaagtataaggttcgaa 43179231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 50112598 - 50112559
Alignment:
Q  29 ataatatatataaagtttgaggttcgaaccccaaacacca 68  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  50112598 ataatatatataaggtttggggttcgaaccccaaacacca 50112559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 1657074 - 1657020
Alignment:
Q  15 ggtaaggataatgcataatatatataaagtttgaggttcgaaccccaaacaccac 69  Q
    |||||||| |||||||||||||| ||| ||||| ||||||||||| | |||||||    
T  1657074 ggtaaggacaatgcataatatatgtaaggtttggggttcgaacccaagacaccac 1657020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 44670039 - 44670097
Alignment:
Q  11 agttggtaaggataatgcataatatatataaagtttgaggttcgaaccccaaacaccac 69  Q
    |||||||||||| ||||||||||||||  ||| ||| ||||||| ||||| ||||||||    
T  44670039 agttggtaaggacaatgcataatatattcaaattttaaggttcgtaccccgaacaccac 44670097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 24785510 - 24785461
Alignment:
Q  11 agttggtaaggataatgcataatatatataaagtttgaggttcgaacccc 60  Q
    |||||||||||| ||||||||||||||| || || || ||||||||||||    
T  24785510 agttggtaaggacaatgcataatatatacaaggtctggggttcgaacccc 24785461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 24822756 - 24822805
Alignment:
Q  11 agttggtaaggataatgcataatatatataaagtttgaggttcgaacccc 60  Q
    |||||||||||| ||||||||||||||| || || || ||||||||||||    
T  24822756 agttggtaaggacaatgcataatatatacaaggtctggggttcgaacccc 24822805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 28311494 - 28311535
Alignment:
Q  16 gtaaggataatgcataatatatataaagtttgaggttcgaac 57  Q
    |||||||||||||||||||||| ||| || ||||||||||||    
T  28311494 gtaaggataatgcataatatatgtaaggtgtgaggttcgaac 28311535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 29568605 - 29568657
Alignment:
Q  17 taaggataatgcataatatatataaagtttgaggttcgaaccccaaacaccac 69  Q
    |||||| |||||||||||||| ||| ||  ||||||||||||||| |||||||    
T  29568605 taaggacaatgcataatatatgtaaggtccgaggttcgaaccccagacaccac 29568657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 36479005 - 36479053
Alignment:
Q  12 gttggtaaggataatgcataatatatataaagtttgaggttcgaacccc 60  Q
    ||||||| ||| |||||||||||||| ||| ||| ||||||||||||||    
T  36479005 gttggtatggacaatgcataatatatgtaaggttcgaggttcgaacccc 36479053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 38470180 - 38470212
Alignment:
Q  1 aacttagtttagttggtaaggataatgcataat 33  Q
    |||||||||||||||||||||| ||||||||||    
T  38470180 aacttagtttagttggtaaggacaatgcataat 38470212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 47806306 - 47806246
Alignment:
Q  9 ttagttggtaaggataatgcataatatatataaagtttgaggttcgaaccccaaacaccac 69  Q
    ||||||||| |||| ||||||||||||||  || || || |||||||||||| ||||||||    
T  47806306 ttagttggtgaggacaatgcataatatatgcaaggtctggggttcgaaccccgaacaccac 47806246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 20151890 - 20151825
Alignment:
Q  4 ttagtttagttggtaaggataatgcataatatatataaagtttgaggttcgaaccccaaacaccac 69  Q
    |||||| || ||||||||| |||| ||||||||||||| |||||| |||||||||| |||||||||    
T  20151890 ttagttcagctggtaaggacaatgtataatatatataaggtttgaagttcgaaccctaaacaccac 20151825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 21164806 - 21164765
Alignment:
Q  11 agttggtaaggataatgcataatatatataaagtttgaggtt 52  Q
    |||||||| |||||||||||||||||||||| ||||||||||    
T  21164806 agttggtatggataatgcataatatatataaggtttgaggtt 21164765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 48837882 - 48837929
Alignment:
Q  13 ttggtaaggataatgcataatatatataaagtttgaggttcgaacccc 60  Q
    |||||| ||||||||||||||||||  |||||||| ||||||||||||    
T  48837882 ttggtatggataatgcataatatatgcaaagtttggggttcgaacccc 48837929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 19793534 - 19793592
Alignment:
Q  11 agttggtaaggataatgcataatatatataaagtttgaggttcgaaccccaaacaccac 69  Q
    |||||| ||||| |||| ||||||||| ||| || || |||||||||||||||||||||    
T  19793534 agttggaaaggacaatgtataatatatgtaaggtctggggttcgaaccccaaacaccac 19793592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 35142197 - 35142139
Alignment:
Q  11 agttggtaaggataatgcataatatatataaagtttgaggttcgaaccccaaacaccac 69  Q
    ||||| || ||| ||||||||||||||  ||||||||||||||||||||| | ||||||    
T  35142197 agttgatatggacaatgcataatatatgcaaagtttgaggttcgaaccccgaccaccac 35142139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 1120079 - 1120022
Alignment:
Q  11 agttggtaaggataatgcataatatatataaagtttgaggttcgaaccccaaacacca 68  Q
    ||||||| |||| ||| |||||||||| |||||||||  |||||||||||| ||||||    
T  1120079 agttggtgaggacaatacataatatatgtaaagtttggtgttcgaaccccagacacca 1120022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 8237688 - 8237631
Alignment:
Q  3 cttagtttagttggtaaggataatgcataatatatataaagtttgaggttcgaacccc 60  Q
    |||||||  ||||||||||| ||||||||||||||| |||||  ||||||| ||||||    
T  8237688 cttagttctgttggtaaggacaatgcataatatatacaaagtccgaggttcaaacccc 8237631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 38553821 - 38553878
Alignment:
Q  1 aacttagtttagttggtaaggataatgcataatatatataaagtttgaggttcgaacc 58  Q
    ||||||| | |||||||||| | |||||||||||||| ||| ||||| ||||||||||    
T  38553821 aacttagctcagttggtaagaacaatgcataatatatgtaaggtttggggttcgaacc 38553878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 677427 - 677395
Alignment:
Q  4 ttagtttagttggtaaggataatgcataatata 36  Q
    ||||||||||||||||||| |||||||||||||    
T  677427 ttagtttagttggtaaggacaatgcataatata 677395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 27068205 - 27068157
Alignment:
Q  11 agttggtaaggataatgcataatatatataaagtttgaggttcgaaccc 59  Q
    |||||||| |||||||||||| |||||  |||||||||||||| |||||    
T  27068205 agttggtatggataatgcatattatatgcaaagtttgaggttcaaaccc 27068157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 27210108 - 27210156
Alignment:
Q  11 agttggtaaggataatgcataatatatataaagtttgaggttcgaaccc 59  Q
    |||||||| |||||||||||| |||||  |||||||||||||| |||||    
T  27210108 agttggtatggataatgcatattatatgcaaagtttgaggttcaaaccc 27210156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 35396648 - 35396688
Alignment:
Q  13 ttggtaaggataatgcataatatatataaagtttgaggttc 53  Q
    |||||||||||||||||||| |||||||| ||||| |||||    
T  35396648 ttggtaaggataatgcataaaatatataacgtttggggttc 35396688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 41087577 - 41087641
Alignment:
Q  4 ttagtttagttggtaaggataatgcataatatatataaagtttgaggttcgaaccccaaacacca 68  Q
    |||| |||||||||||||| |||||||||||||| |||||| ||| ||||||| ||| |||||||    
T  41087577 ttagcttagttggtaaggacaatgcataatatatgtaaagtctgaagttcgaagcccgaacacca 41087641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 38221731 - 38221783
Alignment:
Q  1 aacttagtttagttggtaaggataatgcataatatatataaagtttgaggttc 53  Q
    ||||||||||||||| |||| | ||||||||||||||| |||||||| |||||    
T  38221731 aacttagtttagttgataagaacaatgcataatatatacaaagtttggggttc 38221783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 41258976 - 41259010
Alignment:
Q  3 cttagtttagttggtaaggataatgcataatatat 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  41258976 cttagtttagttggtaaggacaatgcataatatat 41259010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 8139720 - 8139773
Alignment:
Q  3 cttagtttagttggtaaggataatgcataatatatataaagtttgaggttcgaa 56  Q
    |||||||||||||||| ||| ||||||||||||||  || || |||||||||||    
T  8139720 cttagtttagttggtatggacaatgcataatatatgcaaggtctgaggttcgaa 8139773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 30200839 - 30200888
Alignment:
Q  11 agttggtaaggataatgcataatatatataaagtttgaggttcgaacccc 60  Q
    ||||| |||||| ||||||||||||||  || ||||||||||||||||||    
T  30200839 agttgctaaggacaatgcataatatatgcaaggtttgaggttcgaacccc 30200888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 48376848 - 48376893
Alignment:
Q  11 agttggtaaggataatgcataatatatataaagtttgaggttcgaa 56  Q
    ||||||||| ||||||||||||||||| ||| ||||| ||||||||    
T  48376848 agttggtaaagataatgcataatatatgtaaggtttggggttcgaa 48376893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 54230147 - 54230098
Alignment:
Q  11 agttggtaaggataatgcataatatatataaagtttgaggttcgaacccc 60  Q
    |||||||||||| ||||||||||||||  || ||||| ||||||||||||    
T  54230147 agttggtaaggacaatgcataatatatgcaaggtttggggttcgaacccc 54230098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 35191865 - 35191809
Alignment:
Q  11 agttggtaaggataatgcataatatatataaagtttgaggttcgaaccccaaacacc 67  Q
    |||||||||||| ||||||||||||||  || || || ||||||||||||| |||||    
T  35191865 agttggtaaggacaatgcataatatatgcaaggtctggggttcgaaccccagacacc 35191809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 45096029 - 45096097
Alignment:
Q  1 aacttagtttagttggtaaggataatgcataatatatataaagtttgaggttcgaaccccaaacaccac 69  Q
    ||||||| | ||||| |||||| ||||||||||||||  || || || ||||||||||||| |||||||    
T  45096029 aacttagctcagttgataaggacaatgcataatatatgcaaggtctgtggttcgaaccccagacaccac 45096097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 9872153 - 9872103
Alignment:
Q  11 agttggtaaggataatgcataatatatataaagtttgaggttcgaacccca 61  Q
    |||||||||||||||||||||||||||  || ||||| |||||||||||||    
T  9872153 agttggtaaggataatgcataatatatgcaaggtttgcggttcgaacccca 9872103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 8210441 - 8210406
Alignment:
Q  3 cttagtttagttggtaaggataatgcataatatata 38  Q
    |||||||||||||||||||| |||||||||||||||    
T  8210441 cttagtttagttggtaaggacaatgcataatatata 8210406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 34599961 - 34599922
Alignment:
Q  17 taaggataatgcataatatatataaagtttgaggttcgaa 56  Q
    ||||||||||||||||||||||||| ||||| ||||||||    
T  34599961 taaggataatgcataatatatataaggtttggggttcgaa 34599922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 58
Target Start/End: Complemental strand, 25524251 - 25524217
Alignment:
Q  24 aatgcataatatatataaagtttgaggttcgaacc 58  Q
    |||||||||||||||||||||||| ||||||||||    
T  25524251 aatgcataatatatataaagtttggggttcgaacc 25524217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 35527942 - 35527988
Alignment:
Q  22 ataatgcataatatatataaagtttgaggttcgaaccccaaacacca 68  Q
    |||||||||||||||||||| ||||| |||||||||| |||| ||||    
T  35527942 ataatgcataatatatataaggtttggggttcgaacctcaaatacca 35527988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 3157752 - 3157707
Alignment:
Q  24 aatgcataatatatataaagtttgaggttcgaaccccaaacaccac 69  Q
    ||||||||||||||| || ||||||||||| |||||||| ||||||    
T  3157752 aatgcataatatatacaaggtttgaggttcaaaccccaaccaccac 3157707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 13135803 - 13135746
Alignment:
Q  11 agttggtaaggataatgcataatatatataaagtttgaggttcgaaccccaaacacca 68  Q
    |||||||||||||||| |||||||||  |||||| || |||||||||| || ||||||    
T  13135803 agttggtaaggataatccataatataagtaaagtctggggttcgaacctcagacacca 13135746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 18056764 - 18056715
Alignment:
Q  11 agttggtaaggataatgcataatatatataaagtttgaggttcgaacccc 60  Q
    |||||||||||| ||||||||||||||  || || |||||||||||||||    
T  18056764 agttggtaaggacaatgcataatatatgcaatgtgtgaggttcgaacccc 18056715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 35337171 - 35337122
Alignment:
Q  11 agttggtaaggataatgcataatatatataaagtttgaggttcgaacccc 60  Q
    ||||||||  ||||||||||||||||||||| || || ||||||||||||    
T  35337171 agttggtatagataatgcataatatatataaggtctgcggttcgaacccc 35337122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 4302455 - 4302491
Alignment:
Q  1 aacttagtttagttggtaaggataatgcataatatat 37  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  4302455 aacttagtttagttggtatggacaatgcataatatat 4302491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 41974767 - 41974823
Alignment:
Q  4 ttagtttagttggtaaggataatgcataatatatataaagtttgaggttcgaacccc 60  Q
    |||||| ||||| || ||||||||||||||||||  || ||||||||||| ||||||    
T  41974767 ttagttcagttgatagggataatgcataatatatgcaaggtttgaggttcaaacccc 41974823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 44068867 - 44068927
Alignment:
Q  9 ttagttggtaaggataatgcataatatatataaagtttgaggttcgaaccccaaacaccac 69  Q
    ||||||||||  |||||||||||||| || ||| |||||||||||||| |||  |||||||    
T  44068867 ttagttggtagagataatgcataatacatttaatgtttgaggttcgaatcccggacaccac 44068927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 1244763 - 1244695
Alignment:
Q  1 aacttagtttagttggtaaggataatgcataatatatataaagtttgaggttcgaaccccaaacaccac 69  Q
    ||||||| | |||||||||||| ||||||||||||||| || || || ||||||||||||  |||||||    
T  1244763 aacttagctcagttggtaaggacaatgcataatatatacaaggtctggggttcgaaccccggacaccac 1244695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 3889893 - 3889953
Alignment:
Q  1 aacttagtttagttggtaaggataatgcata--atatatataaagtttgaggttcgaaccc 59  Q
    ||||||| ||||||||||| || ||||||||  ||||||||||||||  ||||||||||||    
T  3889893 aacttagcttagttggtaaagacaatgcataatatatatataaagttcaaggttcgaaccc 3889953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 7016117 - 7016076
Alignment:
Q  24 aatgcataatatatataaagtttgaggttcgaaccccaaaca 65  Q
    |||| ||||||||||||||| ||||||||||||| |||||||    
T  7016117 aatgtataatatatataaaggttgaggttcgaactccaaaca 7016076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 7404804 - 7404841
Alignment:
Q  24 aatgcataatatatataaagtttgaggttcgaacccca 61  Q
    |||||||||||||||||| || ||||||||||||||||    
T  7404804 aatgcataatatatataaggtctgaggttcgaacccca 7404841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 13284300 - 13284255
Alignment:
Q  24 aatgcataatatatataaagtttgaggttcgaaccccaaacaccac 69  Q
    |||| ||||||||||||| ||||||||||| |||||||| ||||||    
T  13284300 aatgtataatatatataaggtttgaggttcaaaccccaaccaccac 13284255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 30071566 - 30071506
Alignment:
Q  9 ttagttggtaaggataatgcataatatatataaagtttgaggttcgaaccccaaacaccac 69  Q
    ||||||| |||| | ||||||||||||||| || ||||||||||| |||||| | ||||||    
T  30071566 ttagttgataagaacaatgcataatatatacaaggtttgaggttctaaccccgaccaccac 30071506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 20114708 - 20114760
Alignment:
Q  1 aacttagtttagttggtaaggataatgcataatatatataaagtttgaggttc 53  Q
    ||||||| | |||||||||||| ||||||||| ||||| ||||||||||||||    
T  20114708 aacttagctcagttggtaaggacaatgcataaaatatacaaagtttgaggttc 20114760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 21657456 - 21657388
Alignment:
Q  1 aacttagtttagttggtaaggataatgcataatatatataaagtttgaggttcgaaccccaaacaccac 69  Q
    ||||||||| |||| ||| ||| |||||||||||||| ||| ||||||||||| |||| || |||||||    
T  21657456 aacttagttcagtttgtagggacaatgcataatatatgtaaggtttgaggttcaaacctcagacaccac 21657388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 35773098 - 35773043
Alignment:
Q  11 agttggtaaggataatgcataatatatataaagtttgaggttcgaaccccaaacac 66  Q
    ||||| ||||||||||||| ||||||| |||||| |||||||||||| || |||||    
T  35773098 agttgataaggataatgcacaatatatgtaaagtgtgaggttcgaactccgaacac 35773043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 36868772 - 36868729
Alignment:
Q  19 aggataatgcataatatatataaagtttgaggttcgaaccccaa 62  Q
    |||| ||||||||||||||| |||||||||||||| ||||||||    
T  36868772 aggacaatgcataatatatacaaagtttgaggttcaaaccccaa 36868729  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 22745904 - 22745949
Alignment:
Q  13 ttggtaaggataatgcataatatatataaagtttgaggttcgaacc 58  Q
    ||||||||||||||||||||||||| ||| ||  ||||||||||||    
T  22745904 ttggtaaggataatgcataatatatgtaaggtacgaggttcgaacc 22745949  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 5243873 - 5243837
Alignment:
Q  16 gtaaggataatgcataatatatataaagtttgaggtt 52  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  5243873 gtaaggacaatgcataatatatataaaatttgaggtt 5243837  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 13547462 - 13547506
Alignment:
Q  13 ttggtaaggataatgcataatatatataaagtttgaggttcgaac 57  Q
    ||||||||||||||||||||| ||| ||| ||| |||||||||||    
T  13547462 ttggtaaggataatgcataatgtatgtaaggttcgaggttcgaac 13547506  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 39143727 - 39143775
Alignment:
Q  11 agttggtaaggataatgcataatatatataaagtttgaggttcgaaccc 59  Q
    |||||||| ||| | |||||||||||| ||| |||||||||||||||||    
T  39143727 agttggtatggacattgcataatatatgtaaggtttgaggttcgaaccc 39143775  T

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Target: scaffold0734 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0734
Description:

Target: scaffold0734; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 4397 - 4342
Alignment:
Q  3 cttagtttagttggtaaggataatgcataatatatataaagtttgaggttcgaacc 58  Q
    ||||| ||| |||||||||||||||||||||||||  || ||||| ||||||||||    
T  4397 cttagattacttggtaaggataatgcataatatatggaatgtttggggttcgaacc 4342  T

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