View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2312_low_118 (Length: 228)
Name: NF2312_low_118
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_low_118 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 28403142 - 28403349
Alignment:
| Q |
1 |
tttattaaataattagataaatgttacattgacaacgtaatatagttttcttttttaaggacaacgcaatatagttgaaaataatgcaaaacatgtgtaa |
100 |
Q |
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| T |
28403142 |
tttattaaataattagataaatgttacattaacaacgtaatatagttttcttttttaaggacaacgcaatatagttgaaaataatgcaaaacatgtgtaa |
28403241 |
T |
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| Q |
101 |
caaatgaaggaaaaacaaatcaaagtagttaaaccaatttgaatcttcttcaagaatatctctgaatctctgtgctaaccttctgatttatacaaaaatc |
200 |
Q |
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| T |
28403242 |
caaattaaggaaaaacaaatcaaagtagttaaaccaatttgaatcttcttcaagaatatctctgaatctctgtgctaaccttctgatttatac--aaatc |
28403339 |
T |
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| Q |
201 |
agggcataca |
210 |
Q |
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|||||||||| |
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| T |
28403340 |
agggcataca |
28403349 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 148
Target Start/End: Complemental strand, 32835450 - 32835363
Alignment:
| Q |
61 |
acaacgcaatatagttgaaaataatgcaaaacatgtgtaacaaatgaaggaaaaacaaatcaaagtagttaaaccaatttgaatcttc |
148 |
Q |
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||||||||||||| || ||||| || ||||| ||||||||||||| ||||||||| ||| ||| || || | |||||||||| |||| |
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| T |
32835450 |
acaacgcaatatattttaaaattattcaaaatatgtgtaacaaattaaggaaaaaataatgaaaatacttgagccaatttgaaacttc |
32835363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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