View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2312_low_12 (Length: 528)
Name: NF2312_low_12
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 168 - 450
Target Start/End: Original strand, 8713405 - 8713682
Alignment:
| Q |
168 |
cacattgttttcttcatcgtggaggtgacttttcagcagccttggaaattagttacttctattattgtgtctttttgtacatctagaaggaatatcttgc |
267 |
Q |
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| T |
8713405 |
cacattgttttcttcatcgtggaggtgacttttcagcagcctcggaaattagttacttc-attattgtgtctttttgtacatctagaaggaatatcttgc |
8713503 |
T |
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| Q |
268 |
aaactcatcaatatgatgtgagttgtgggcctaatgggacaaattnnnnnnngaccttctttatatattcgctctgtagtagtagactcgacagcatctt |
367 |
Q |
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| T |
8713504 |
aaactcatcaatatgatgtgagttgtgggcctaatgggacaaatt-aaaaaagaccttctttatatattcgctct---gtagtagactcgacagcatctt |
8713599 |
T |
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| Q |
368 |
ccagaatctagatgataaaattaggagtagatacactctgagcgagaagataaccttctagataaaaagggtcttgtcatttg |
450 |
Q |
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| T |
8713600 |
ccagaatctagatgataaaattaggagtagatacactctgagcgagaagataaccttctagataaaaagggtcttgttatttg |
8713682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 8713238 - 8713349
Alignment:
| Q |
1 |
tatgcgggtggtcaggaaactttgattaattcatgtttatttttatgtggttacattttacatatagttgtgtacttctacttctagtagattttatagt |
100 |
Q |
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| T |
8713238 |
tatgtgggtggtcaggaaactttgattaattcatgtttatttttatgtggttacattttacatatagctatgtacttctacttctagtagattttatagt |
8713337 |
T |
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| Q |
101 |
agaatttaattg |
112 |
Q |
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| T |
8713338 |
agaatttaattg |
8713349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 8733880 - 8733940
Alignment:
| Q |
6 |
gggtggtcaggaaactttgattaattcatgtttatttttatgtggttacattttacatatag |
67 |
Q |
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| T |
8733880 |
gggtggtcaggaaactttgattaatacatgttta-ttttatgcggttacatttttcatatag |
8733940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 8734223 - 8734265
Alignment:
| Q |
172 |
ttgttttcttcatcgtggaggtgacttttcagcagccttggaaa |
215 |
Q |
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| T |
8734223 |
ttgttttcttcatcgtggaggtgactttt-agcagccttggaaa |
8734265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 25502027 - 25501967
Alignment:
| Q |
6 |
gggtggtcaggaaactttgattaattcatgtttatttttatgtggttacattttacatatag |
67 |
Q |
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| T |
25502027 |
gggtggtcaggaaactttgattaatacatgttta-ttttatgcggttacatttttcatatag |
25501967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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