View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2312_low_120 (Length: 226)
Name: NF2312_low_120
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_low_120 |
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Alignment Details
Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 9979610 - 9979543
Alignment:
| Q |
7 |
gtattttgtaaattcaaacaaactacatttgacttttatttgacaaacctagaaactggtcagccagtg |
75 |
Q |
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| T |
9979610 |
gtattttgtaaattcaaacaaactacatttgacttttatttgacaaatctagaaactggt-agccagtg |
9979543 |
T |
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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 9979487 - 9979436
Alignment:
| Q |
131 |
gtatatttgttctctagaaagtatcgacctaagctcaaataaatatcgaccta |
183 |
Q |
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| T |
9979487 |
gtatatttgt-ctctagaaagtatcgacctaagctcaaatagatatcgaccta |
9979436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 226
Target Start/End: Complemental strand, 9979419 - 9979391
Alignment:
| Q |
198 |
aagtataaatatggacctcatgaaaaata |
226 |
Q |
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| T |
9979419 |
aagtataaatatggacctcatgaaaaata |
9979391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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