View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2312_low_121 (Length: 224)
Name: NF2312_low_121
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_low_121 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 49467841 - 49468045
Alignment:
| Q |
1 |
gtgccaaggtcaccctaaagaagatgggaagagcataagcaatgtataagtcaatcactgctatggacacccatggcttcaaatgccactatacttccaa |
100 |
Q |
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| T |
49467841 |
gtgccaaggtcaccctaaagaagatgggaagagcataagcaatgtataagtcaatcactgctatggacacc-atggcttcaaatgccactatacttccaa |
49467939 |
T |
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| Q |
101 |
gagactgcaatatatagttcaaatagtgttagacatgtgacataaataaaatcaaagacaatcttgaagtttcatatatataaaaattacgtgtacatac |
200 |
Q |
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| T |
49467940 |
gagactgcaatatatagttcaaatagtgttagacatgtgacataaataaaatcaaagacaatcttgaagtctcatatatatataaattatgtgtacatac |
49468039 |
T |
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| Q |
201 |
cgttag |
206 |
Q |
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|||||| |
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| T |
49468040 |
cgttag |
49468045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 49460476 - 49460581
Alignment:
| Q |
3 |
gccaaggtcaccctaaagaagatgggaagagcataagcaatgtataagtcaatcactgctatggacacccatggcttcaaatgccactatacttccaaga |
102 |
Q |
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|||||||| || || |||||||| || || |||||||||||||| | | | |||||||||||||| ||| |||||||||||||||||||| ||||||||| |
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| T |
49460476 |
gccaaggtaactctgaagaagataggcagtgcataagcaatgtagaggcctatcactgctatggatacc-atggcttcaaatgccactatgcttccaaga |
49460574 |
T |
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| Q |
103 |
gactgca |
109 |
Q |
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||||||| |
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| T |
49460575 |
gactgca |
49460581 |
T |
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