View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2312_low_122 (Length: 223)
Name: NF2312_low_122
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_low_122 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] scaffold0097 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 2660234 - 2660457
Alignment:
| Q |
1 |
tagttagcattacaagacttctttttatatggagacaaattagtcaacaaaagttaatatatttgatttataatgtagactaaatacatcaacttaactt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2660234 |
tagttagcattacaagacttctttttatatggagacaaattagtcaacaaaagttaatatatttgatttataatgtagactaaatacatcaacttaactt |
2660333 |
T |
|
| Q |
101 |
ttgttgatccatttgtctcttataaaaaatgacattttgtcgacataacatcaatgctatatgtc-gagaggttttcatgcaaattttcataaattatac |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
2660334 |
ttgttgatccatttgtctcttataaaaaatgacattttgtcgacataacatcaatgctatatgtctgagaggttttcatgcaaattttcataaataatac |
2660433 |
T |
|
| Q |
200 |
aggttttcactccaattgctaact |
223 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
2660434 |
aggttttcactccaattgctaact |
2660457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 129
Target Start/End: Complemental strand, 30443834 - 30443742
Alignment:
| Q |
32 |
gagacaaattagtcaacaaaagttaatatatttgatttataatgtagactaaatacatcaacttaacttttgttgatccatttgtctcttataaaaaa |
129 |
Q |
| |
|
|||||||||| |||||| |||||| || |||||| || ||||| ||||| |||||||| ||||||||||||| |||||||| |||||||||||| |
|
|
| T |
30443834 |
gagacaaattggtcaactaaagttgatgtatttggttcataatatagaccaaatacat-----taacttttgttgacccatttgtttcttataaaaaa |
30443742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 46169951 - 46169915
Alignment:
| Q |
56 |
aatatatttgatttataatgtagactaaatacatcaa |
92 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
46169951 |
aatatatctgatttataatatagactaaatacatcaa |
46169915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 92
Target Start/End: Original strand, 37930 - 37985
Alignment:
| Q |
37 |
aaattagtcaacaaaagttaatatatttgatttataatgtagactaaatacatcaa |
92 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||| ||| || || ||||||||||| |
|
|
| T |
37930 |
aaattagtcaacaaaagttaatgtatttggtttaaaatttataccaaatacatcaa |
37985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 21485038 - 21484981
Alignment:
| Q |
35 |
acaaattagtcaacaaaagttaatatatttgatttataatgtagactaaatacatcaa |
92 |
Q |
| |
|
||||||| |||||| ||| || || |||||| || ||||||||||||||||||||||| |
|
|
| T |
21485038 |
acaaattggtcaaccaaaattgatgtatttggttcataatgtagactaaatacatcaa |
21484981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 12276845 - 12276898
Alignment:
| Q |
43 |
gtcaacaaaagttaatatatttgatttataatgtagactaaatacatcaactta |
96 |
Q |
| |
|
|||| ||||||||||| ||||||||| | ||| || |||||||||||||||||| |
|
|
| T |
12276845 |
gtcagcaaaagttaatgtatttgattcaaaatttatactaaatacatcaactta |
12276898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 128
Target Start/End: Complemental strand, 18096972 - 18096940
Alignment:
| Q |
96 |
aacttttgttgatccatttgtctcttataaaaa |
128 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
18096972 |
aacttttgttgacccatttgtctcttataaaaa |
18096940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 6282583 - 6282623
Alignment:
| Q |
32 |
gagacaaattagtcaacaaaagttaatatatttgatttata |
72 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||| |||||| |
|
|
| T |
6282583 |
gagacaaatgagtcaacaaaaattaatatatttggtttata |
6282623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 92
Target Start/End: Complemental strand, 48377877 - 48377845
Alignment:
| Q |
60 |
tatttgatttataatgtagactaaatacatcaa |
92 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
|
|
| T |
48377877 |
tatttgatttataatatagactaaatacatcaa |
48377845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University