View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2312_low_129 (Length: 214)
Name: NF2312_low_129
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_low_129 |
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| [»] chr5 (3 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 28402173 - 28402384
Alignment:
| Q |
1 |
aactttttacagaactcgacaaatcttattcttatgttatcagagttgcgaatggagcaaaaattacagtagaaggcattggaacagttgtatttaagaa |
100 |
Q |
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| T |
28402173 |
aactttttacacaactcgacaaatcttattcttatgtgatcagagttgcgaatggagcaaaaattacagtagaaggcattggaacagttgtatttaagaa |
28402272 |
T |
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| Q |
101 |
ttactcaggttcgaaactagttttgaatgttttatatatgttcctcaaatttctgaaaatcttttaagtgttcatgaattgttgaagaatggctacaaag |
200 |
Q |
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| T |
28402273 |
tcactcaggttcgaaactagttttgaatgttt--tatatgttcctcaaatttctgaaaatctcttaagtgttcctgaattgttgaagaatggctacaaag |
28402370 |
T |
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| Q |
201 |
tgttatttgaacat |
214 |
Q |
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|||||||||||||| |
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| T |
28402371 |
tgttatttgaacat |
28402384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 4 - 214
Target Start/End: Original strand, 19931132 - 19931340
Alignment:
| Q |
4 |
tttttacagaactcgacaaatcttattcttatgttatcagagttgcgaatggagcaaaaattacagtagaaggcattggaacagttgtatttaagaatta |
103 |
Q |
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| T |
19931132 |
tttttacagaactcgacaaatcttattcttctgtgatgacagttgcgaatggagcaaatattacagcagaaggcattggaacagttgtatttaagaatca |
19931231 |
T |
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| Q |
104 |
ctcaggttcgaaactagttttgaatgttttatatatgttcctcaaatttctgaaaatcttttaagtgttcatgaattgttgaagaatggctacaaagtgt |
203 |
Q |
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| T |
19931232 |
ctcaggttcgaaactagttttgaatgttt--tatatgttcctcaaatttctgaaaatcttttaagtgttcctgaattgttgaataatggctacaaagtgt |
19931329 |
T |
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| Q |
204 |
tatttgaacat |
214 |
Q |
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| T |
19931330 |
tatttgaacat |
19931340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 4 - 214
Target Start/End: Complemental strand, 19134168 - 19133960
Alignment:
| Q |
4 |
tttttacagaactcgacaaatcttattcttatgttatcagagttgcgaatggagcaaaaattacagtagaaggcattggaacagttgtatttaagaatta |
103 |
Q |
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||||||| |||||||||||||||||||||| ||| || |||||||||||||||||| |||||||| |||||||||||||||| | |||||||||||| | |
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| T |
19134168 |
tttttaccgaactcgacaaatcttattcttctgtgattagagttgcgaatggagcagaaattacatcagaaggcattggaacaatagtatttaagaatca |
19134069 |
T |
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| Q |
104 |
ctcaggttcgaaactagttttgaatgttttatatatgttcctcaaatttctgaaaatcttttaagtgttcatgaattgttgaagaatggctacaaagtgt |
203 |
Q |
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| T |
19134068 |
ttcaggttccaaactagttttgaatgtttt--atatgttcctcaaatttccgaaaatcttttaagtgttcctcaattgttgaagaatggttacaaagtgt |
19133971 |
T |
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| Q |
204 |
tatttgaacat |
214 |
Q |
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| T |
19133970 |
tatttgaacat |
19133960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 68 - 214
Target Start/End: Original strand, 32531514 - 32531658
Alignment:
| Q |
68 |
agtagaaggcattggaacagttgtatttaagaattactcaggttcgaaactagttttgaatgttttatatatgttcctcaaatttctgaaaatcttttaa |
167 |
Q |
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| T |
32531514 |
agtagaaggcattgggacagttttagttaaaagtcactcaggttataaacaaatttcgaatgttttatat--gctcctaaacttaatcaaagtcttttaa |
32531611 |
T |
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| Q |
168 |
gtgttcatgaattgttgaagaatggctacaaagtgttatttgaacat |
214 |
Q |
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| T |
32531612 |
gtgttcctcagttgttgacgaaaggctacaaagtgttgtttgaacat |
32531658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 137
Target Start/End: Complemental strand, 30759738 - 30759645
Alignment:
| Q |
44 |
agttgcgaatggagcaaaaattacagtagaaggcattggaacagttgtatttaagaattactcaggttcgaaactagttttgaatgttttatat |
137 |
Q |
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| T |
30759738 |
agttgcgaatggagcacctattgaggtagaaggcattggaacaattacaattagaaatcactcaggtttgaaactaattttgaatgttttatat |
30759645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 30749458 - 30749394
Alignment:
| Q |
69 |
gtagaaggcattggaacagttgtatttaagaattactcaggttcgaaactagttttgaatgtttt |
133 |
Q |
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| T |
30749458 |
gtagaaggctttggaacagttacaattaaacatcactcaggtttgaaactaattttgaatgtttt |
30749394 |
T |
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