View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2312_low_13 (Length: 507)
Name: NF2312_low_13
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 19 - 491
Target Start/End: Complemental strand, 46942067 - 46941618
Alignment:
| Q |
19 |
attaggaattgtactagctccttcatattaactcacaaataactcaccgtaaatatccttcttctataacgtttatgtttaatcaatcgaactcaaatca |
118 |
Q |
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| T |
46942067 |
attaggaattgtactagctccttcatattaactcacaaacaactcaccgtaaatatccttcttctataacgtttatgtttaatcaatcgaactcaaatca |
46941968 |
T |
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| Q |
119 |
ctgttagatcaagactgagaaactgagaaatttaagctttcttaataaataattacaaactcggccaacttgtccaaaatagattaataaggtaattgga |
218 |
Q |
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| T |
46941967 |
ctgttagatcaagactgagaaactgagaaattt--------------------tacaaactcggccaacttgtccaaaatagattaataaggtatttgga |
46941888 |
T |
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| Q |
219 |
tatagaaattaattaaacgtttaatgaaaaaatagttatgatttaagcaaattaagaataccatctgcacttctctcnnnnnnnnnnnnnnngaatacca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
46941887 |
tatagaaattaattaaacgtttaatgaaaaaatagttatgatttaagcaaattaagaatatcatctgcacttctctcaaaaaaaaaaa----gaatacca |
46941792 |
T |
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| Q |
319 |
tctggactttttaaaaaa-tcatatttaacttataaaaaactatttctacgtgtgaagtttaccctttttctttaaagcaaatagaagttatttctatga |
417 |
Q |
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|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46941791 |
tctggactttttaaaaaaatcatatttagcttataaaaaactatttctacgtgtgaagtttaccctttttctttaaagcaaatagaagttatttctatga |
46941692 |
T |
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| Q |
418 |
tataaaatgaaatgttgttatagtgatggcgtatagattgtaagctatatttcgataatttacactagtcatga |
491 |
Q |
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| T |
46941691 |
tataaaatgaaatgttgttatagtgatggcgtatagattgtaagctatatttcgataatttacactagtcatga |
46941618 |
T |
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