View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2312_low_14 (Length: 501)
Name: NF2312_low_14
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_low_14 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 14 - 501
Target Start/End: Complemental strand, 34336199 - 34335712
Alignment:
| Q |
14 |
acctgtgttttattggtctaaatctgcaaaatcaatggaaaatgtttggatttatgaagtttaatcctcctgataaatataannnnnnnngtagatcatt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
34336199 |
acctgtgttttattggtctaaatctgcaaaatcaatggaaaatgtttggatttatgaagtttaatcctcctgataaatataattttttttgtagatcatt |
34336100 |
T |
|
| Q |
114 |
acaaaacacaaaagtttagtatatggtggctactacttcaggattccattctgcgatgcttgatcaagaagactcttcccggcatgtaatccttgacgat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34336099 |
acaaaacacaaaagtttagtatatggtggctactacttcaggattccattttgcgatgcttgatcaagaagactcttcccggcatgtaatccttgacgat |
34336000 |
T |
|
| Q |
214 |
tttatacattttgtaatatctaatagaagtgaagaataagttcatgcatttacttgtattcatatgctacaagatgttctgaggtagcattaagccttgg |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34335999 |
tttatacattttgtaatatctaatagaagtgaagaataaattcatgcatttacttgtattcatatgctacaagatgttctgaggtagcattaagccttgg |
34335900 |
T |
|
| Q |
314 |
aagctttgcccttggagcttcagtggcaccattagacccttgagggcagaacacaatgtacactgatgcatcacgaccaagttctagattgtatacacgc |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
34335899 |
aagctttgcccttggagcttcagtggcaccattagacccttgagggcagaacacaatgtacactgatgcatcacgaccaagttctagatcgtatacacgc |
34335800 |
T |
|
| Q |
414 |
ttccctgcagcatattctcccataagttggtaggatctttctgattgatccattgcaacacaaatatcatcactacctgctcaaattc |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34335799 |
ttccctgcagcatattctcccataagttggtaggatctttctgattgatccattgcaacacaaatatcatcactacctgctcaaattc |
34335712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University