View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2312_low_16 (Length: 483)
Name: NF2312_low_16
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 12 - 468
Target Start/End: Complemental strand, 48230627 - 48230147
Alignment:
| Q |
12 |
aagaagaatcaattatatatatacaggaacatagacaatctaaaaaagcacatacctgtgaaataaatgaatgagatttgaatcatatgaagcattattg |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48230627 |
aagaagaatcaattatatatatacaggaacatagacaatctaaaaaagcacatacctgtgaaataaatgaatgagatttgaatcatatgaagcattattg |
48230528 |
T |
|
| Q |
112 |
ccttaa---agtaatgaagtcacaagttgaaatctagggttagtccaaccattaaaaagtggaaaacgataaaaagaactaattttc------------- |
195 |
Q |
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| T |
48230527 |
ccttaaagtagtaatgaagtcacaagttgaaatctagggttagtccaaccattaaaaagtggaaaacgataaaaagaactaattttcttttgaaaagtta |
48230428 |
T |
|
| Q |
196 |
--ttttgaatctcggtggattgtgcaagtgaaactagtgtcataaactacagagaaataggtatgaaaacataaaacgaacaagagtnnnnnnnnnnnnt |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
48230427 |
tattttgaatctcggtggattgtgcaagtgaaactagtgtcataaactacagagaaataggtatgaaaacataaaacgaacaagagtgagagagagagat |
48230328 |
T |
|
| Q |
294 |
ggtggtggggtgacagatagagagtaagcacatatagcttcaagcatgaaacatcatcgtgcaagaaaacaccatgtgtgctcactctcttctgtcacc- |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48230327 |
ggtggtggggtgacagatagagagtaagcacatatagcttcaagcaggaaacataatcgtgcaagaaaacaccatgtgtgctcactctcttctgtcacca |
48230228 |
T |
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| Q |
393 |
-----acccttacccttaattaaccctcatttctggaatgttatgggagataattggtaatgggggagacaacaagttaat |
468 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48230227 |
cccttacccttacccttaattaaccctcatttctggaatgttatgggagataattggtaatgggggagacaacaagttaat |
48230147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 293 - 400
Target Start/End: Original strand, 4043016 - 4043120
Alignment:
| Q |
293 |
tggtggtggggtgacagatagagagtaagcacatatagcttcaagcatgaaacatcatcgtgcaagaaaacaccatgtgtgctcactctcttctgtcacc |
392 |
Q |
| |
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||||| |||||||||||||||||||| |||||| |||||||| || |||||||||||| || |||| ||||||||||||||||||||||||||||| |
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| T |
4043016 |
tggtgatggggtgacagatagagagtgagcacacatagcttcgagaatgaaacatcata---cacgaaagtaccatgtgtgctcactctcttctgtcacc |
4043112 |
T |
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| Q |
393 |
acccttac |
400 |
Q |
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||||||| |
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| T |
4043113 |
tcccttac |
4043120 |
T |
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