View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2312_low_2 (Length: 732)
Name: NF2312_low_2
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 549; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 5 - 654
Target Start/End: Complemental strand, 35703591 - 35702925
Alignment:
| Q |
5 |
actgaaatgaaattcttcaatgctaaaatgacataacttagatgaagaggactcaaacacaagtttttcatgcagataaataaataaattattcacatgt |
104 |
Q |
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| T |
35703591 |
actgaaatgaaattcttcaatgctaaaatgacataacttagatgaaaaggactcgaacacaagtttttcatgcagataaataaataaattattcacatgt |
35703492 |
T |
|
| Q |
105 |
gcaaaaagcttaggaaggaaaaatctaggaatcaaaattaaccacacccacactggtaaaaaattctgcactaaactcaccataaactgtgtttatggat |
204 |
Q |
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| T |
35703491 |
gtaaaaagcttaggaaggaaaaatctaggaatcaaaattaagcacacccacactgctaaaaaattctgcactaaactcaccataaactgtgtttatggat |
35703392 |
T |
|
| Q |
205 |
gcaggagaaggtgttgacatgaagttaaggccaatgtagaataccaacattaatacaatggtcaccatcagataagttggtaccgccaaagcccagtatc |
304 |
Q |
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| T |
35703391 |
gcaggagaaggtgttgacatgaagttaaggccaatgtagaataccaacattaatacaatggtcaccatcagataagttggtaccgccaaagcccagtatc |
35703292 |
T |
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| Q |
305 |
tgaaaagcataagtagttttcaatgcacaagtagttaaatcgctaaatggaagagctcactacacctgcttcatacaccttagttgagtttacatttaca |
404 |
Q |
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| T |
35703291 |
tgaaaagcataagtagttttcaatgcacaagtagttaaatcgctaaatggaagagctcactacacctgcttcatacaccttagttgagtttacatttaca |
35703192 |
T |
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| Q |
405 |
aaattaaattaaa-----ttaaggcaccataattcttc-----------ttcttgtttttgtgcgaccaaacaattacatacagcagaagatctgcatgg |
488 |
Q |
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| T |
35703191 |
aaattaaattaaattaaattaaggcaccagaattcttctcactttagatttcttatttttgtgcaaccaaacaattacatagagcagaagacctgcatgg |
35703092 |
T |
|
| Q |
489 |
ttgcaaaagcttgaaatgataaaaggaattgaggtgtctaacctgctaggatagtaggagatgccaatagaatgtagccatgattctggaacatatgccc |
588 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35703091 |
ttgcaaaagcttcaaatgataaaaggaattgaggtgtctaacctgctaggatagtaggagatgccaatagaatgtagccatgattctggaacatatgccc |
35702992 |
T |
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| Q |
589 |
ataccaagaaaataactattcacaaaggaaaacgaacaaagtataaat-aacaaaatgccacaggaa |
654 |
Q |
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| T |
35702991 |
ataccaagaaaataactattcacaaaggaaaatgaacaaagtataaataaaaaaaatgccacaggaa |
35702925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 438 - 626
Target Start/End: Complemental strand, 7956881 - 7956693
Alignment:
| Q |
438 |
ttcttgtttttgtgcgaccaaacaattacatacagcagaagatctgcatggttgcaaaagcttgaaatgataaaaggaattgaggtgtctaacctgctag |
537 |
Q |
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| T |
7956881 |
ttcttgtttttgtgacaccaaacaattacatacagtagaggacctgcatggttgataaagcttcaaatgatagcaggaattgaggtgtctaacctgctag |
7956782 |
T |
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| Q |
538 |
gatagtaggagatgccaatagaatgtagccatgattctggaacatatgcccataccaagaaaataactattcacaaaggaaaacgaaca |
626 |
Q |
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| T |
7956781 |
gatagtaggaaatgccaatagaatgtagccatgattctggaacatatgcccataccaagaaaataactattcacaaaggaaaatgaaca |
7956693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 126 - 323
Target Start/End: Complemental strand, 7957199 - 7957002
Alignment:
| Q |
126 |
aatctaggaatcaaaattaaccacacccacactggtaaaaaattctgcactaaactcaccataaactgtgtttatggatgcaggagaaggtgttgacatg |
225 |
Q |
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||||||| |||||||||||||||||||| || || ||||| ||| || | ||||||||||| |||||| ||||| |||||||||||| |||||||||||| |
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| T |
7957199 |
aatctagcaatcaaaattaaccacacccgcattgctaaaatattatgtattaaactcaccaaaaactgcgtttaaggatgcaggagatggtgttgacatg |
7957100 |
T |
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| Q |
226 |
aagttaaggccaatgtagaataccaacattaatacaatggtcaccatcagataagttggtaccgccaaagcccagtatctgaaaagcataagtagttt |
323 |
Q |
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| T |
7957099 |
aagttaaggccaatgtagaatgccaacattaatacaatggtcaccatcacataagttggtactgccaaagcccagtatctgaaaagcataagtagttt |
7957002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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