View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2312_low_20 (Length: 461)
Name: NF2312_low_20
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 427; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 18 - 452
Target Start/End: Original strand, 41890248 - 41890682
Alignment:
| Q |
18 |
tttaggtatagaaactataagtggatgaatcagcaataatgttcctcaagccaccaactgttgatgccagcataatacatacacctatgtaaattccagc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41890248 |
tttaggtatagaaactataagtggatgaatcagcaataatgttcctcaagccaccaactgttgatgccagcataatacatacacctatgtaaattccagc |
41890347 |
T |
|
| Q |
118 |
ctgaaataaaagacacaaattgataatcaatacattgataaaacaagtcttaaatttctttggtttcttgattcattacccaattgatgaaccagttgat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41890348 |
ctgaaataaaagacacaaattgataatcaatacattgagaaaacaagtcttaaatttctttggtttcttgattcattacccaattgatgaaccagttgat |
41890447 |
T |
|
| Q |
218 |
gctgaatttctttggtttcttgattatcatccacattatgctaggaagctgaaacaattaacaagccaataattgactttttagtttcagaatcaattca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41890448 |
gctgaatttctttggtttcttgattatcatccacattatgctaggaagctgaaacaattaacaagccaataattgactttttagtttcagaatcaattca |
41890547 |
T |
|
| Q |
318 |
tcttaaattgacaatttgacataagaatagagaggacaagagagccttacaaaatatgaagtgggagcaaaaccaaatccaccaaagaatccaagaagat |
417 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41890548 |
ttttaaattgacaatttgacataagaatagagaggacaagagagccttacaaaatatgaagtgggagcaaaaccaaatccaccaaagaatccaagaagat |
41890647 |
T |
|
| Q |
418 |
caccaaagaatggaaaagtgactccaaagaataat |
452 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
41890648 |
caccaaagaatggaaaagtgactccaaagaataat |
41890682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 190 - 452
Target Start/End: Original strand, 41896022 - 41896294
Alignment:
| Q |
190 |
tcattacccaattgatgaaccagttgatgctgaatttctttggtttcttgattatcatccacattatgctaggaagctgaaacaattaacaagccaataa |
289 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||| || |||| ||||||||||||| ||||||||| |||||||||||||| |||| ||||| ||||| |
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| T |
41896022 |
tcattacccaattgatgaaccaattgatactgaatctccttggcttcttgattatcaaccacattatactaggaagctgaaataattcacaagaaaataa |
41896121 |
T |
|
| Q |
290 |
ttgactttttagtttcagaatcaattcatcttaaa--ttgacaatttgacataagaatagaga--------ggacaagagagccttacaaaatatgaagt |
379 |
Q |
| |
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|| | |||| ||| | ||| ||||||| | ||| |||||||||||||||||| ||||||| ||||||||| |||||||||||||||| || |
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| T |
41896122 |
ttcatcttttgattttataattaattcatttaaaaatttgacaatttgacataagcatagagaaattgagaggacaagagtgccttacaaaatatgacgt |
41896221 |
T |
|
| Q |
380 |
gggagcaaaaccaaatccaccaaagaatccaagaagatcaccaaagaatggaaaagtgactccaaagaataat |
452 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||| |||||||| |||||| | || ||||| |||||| |
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|
| T |
41896222 |
gggagcaaaaccaaatccaccaaagaacccaagaagatctccaaagaaaggaaaactcaccccaaataataat |
41896294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 41895805 - 41895917
Alignment:
| Q |
18 |
tttaggtatagaaactataagtggatgaatcagcaataatgttcctcaagccaccaactgttgatgccagcataatacatacacctatgtaaattccagc |
117 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||| ||||||||| ||||||||| ||||| || | |
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| T |
41895805 |
tttaggtataaaaactataagtggatgaatcaacaataatgttcctcaagccaccaattgtagatgccaacataatacacacacctatgcaaattgcaac |
41895904 |
T |
|
| Q |
118 |
ctgaaataaaaga |
130 |
Q |
| |
|
||||||| ||||| |
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|
| T |
41895905 |
ctgaaatgaaaga |
41895917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 193 - 276
Target Start/End: Complemental strand, 22552153 - 22552070
Alignment:
| Q |
193 |
ttacccaattgatgaaccagttgatgctgaatttctttggtttcttgattatcatccacattatgctaggaagctgaaacaatt |
276 |
Q |
| |
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|||||||||| ||||||||||||||||| ||| ||||||||||||||||||| | ||||||||| ||||||||||||||||||| |
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| T |
22552153 |
ttacccaatttatgaaccagttgatgctaaatctctttggtttcttgattattagccacattatactaggaagctgaaacaatt |
22552070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 363 - 427
Target Start/End: Complemental strand, 22551974 - 22551910
Alignment:
| Q |
363 |
cttacaaaatatgaagtgggagcaaaaccaaatccaccaaagaatccaagaagatcaccaaagaa |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
22551974 |
cttacaaaatatgaagtgggagcaaaaccaaatccaccaaagaagccaagaagatcgccaaagaa |
22551910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 22552317 - 22552211
Alignment:
| Q |
18 |
tttaggtatagaaactataagtggatgaatcagcaataatgttcctcaagccaccaactgttgatgccagcataatacatacacctatgtaaattccagc |
117 |
Q |
| |
|
||||||| ||||| ||||| | |||||||||||||| || ||||| |||||||||| || |||||||||||||| || ||||| ||||| || |||| |
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|
| T |
22552317 |
tttaggtgtagaagctatatgatgatgaatcagcaatgatattcctgaagccaccaatagtggatgccagcataatgcacacaccaatgtatatggcagc |
22552218 |
T |
|
| Q |
118 |
ctgaaat |
124 |
Q |
| |
|
||||||| |
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|
| T |
22552217 |
ctgaaat |
22552211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 430
Target Start/End: Complemental strand, 43855252 - 43855185
Alignment:
| Q |
363 |
cttacaaaatatgaagtgggagcaaaaccaaatccaccaaagaatccaagaagatcaccaaagaatgg |
430 |
Q |
| |
|
||||||||||||| ||||||||||| | ||||| ||||| |||||||| ||| ||||||||||||| |
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| T |
43855252 |
cttacaaaatatgttgtgggagcaaatgccaatcctccaaaaaatccaaggagagcaccaaagaatgg |
43855185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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