View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2312_low_22 (Length: 444)
Name: NF2312_low_22
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 18 - 429
Target Start/End: Complemental strand, 29882896 - 29882481
Alignment:
| Q |
18 |
aaattctgtgaccatattgttcaaaagctatgtatgacttttctgactcagacgaatgtttcaacatttttctcaaattaaagaataaaaatatttgatg |
117 |
Q |
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| T |
29882896 |
aaattctgtgaccatattgttcaaaagctatgtatgacttttctgactcagacgaatgtttcaacatttttctcaaattaaagaataaaaatatttgatg |
29882797 |
T |
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| Q |
118 |
atgatccttctttgcaaatttgaactttacatttggatatggataatccttcattttcccacgtatcatgaagaagaagcttctctcaattaaatgtgat |
217 |
Q |
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| T |
29882796 |
atgatccctctttgcaaatttgaactttacatttggatatggataatccttcatttttccacgtatcatgaagaagaagcttctctcaattaaatgtgat |
29882697 |
T |
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| Q |
218 |
gtaatgacctcaataaaa----taatatcatgtgtagagcagtatagaccgtagattgcggtgtgatcaagaggtgcaaaatggatttagtatgtacaaa |
313 |
Q |
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| T |
29882696 |
gtaatgacctcaataaaataagtaatatcatgtgtagagcagtatagaccgtagattgcggtgtgatcaagaggtgcaaaatggatttagtatgtacaaa |
29882597 |
T |
|
| Q |
314 |
aattgaaaataaatttttaattgtatttttaatcctctatttgattacactcacatgaatctgggttgggaagtcctactttaagtctccttcattagga |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29882596 |
aattgaaaataaatttttaattgtatttttaatcctctatttgattacactcacatgaatctgggttgggaagtcctactttaagtctcctacattagga |
29882497 |
T |
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| Q |
414 |
ttggagtgaagtccag |
429 |
Q |
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|||||||||||||||| |
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| T |
29882496 |
ttggagtgaagtccag |
29882481 |
T |
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