View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2312_low_26 (Length: 420)
Name: NF2312_low_26
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 242 - 412
Target Start/End: Complemental strand, 33126730 - 33126560
Alignment:
| Q |
242 |
gtggttggaccaaacacagcatatcttgtctcatgcgtagaagcacagtacataggagtagccaatgtagcgtctaaatcatgttgtcttcacaacctac |
341 |
Q |
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| T |
33126730 |
gtggttggaccaaacacaacatatcttgtctcatgcgtagaagcacagtacataggagtagccaatgtagcgtctaaatcatgttgtcttcacaacctac |
33126631 |
T |
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| Q |
342 |
tcttagaattatattgtcctatcacaaaagttactctggtcaattgtgacaacatcaacattgttcatctc |
412 |
Q |
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| T |
33126630 |
tctttgaattatattgtcctatcacaaaagttactctggtcaattgtgacaacatcaacgttgtttatctc |
33126560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 33126971 - 33126836
Alignment:
| Q |
1 |
acaaaatatatattatgttaagaatatatcagatttaaaagtatcatttaatgnnnnnnnnaatgaataatctctttgatgtcatatatttttaaaaagt |
100 |
Q |
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| T |
33126971 |
acaaaatatatattatgttaagaatatatcagatttaaaagtatcatttaatgttttttttaatgaataatctctttgatgtcatatatttttaaaaagt |
33126872 |
T |
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| Q |
101 |
tgtagtattttttagtttcaattattataagaaggg |
136 |
Q |
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| T |
33126871 |
tgtagtattttttagtttcaattattataagaaggg |
33126836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 396
Target Start/End: Complemental strand, 37526428 - 37526362
Alignment:
| Q |
330 |
ttcacaacctactcttagaattatattgtcctatcacaaaagttactctggtcaattgtgacaacat |
396 |
Q |
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| T |
37526428 |
ttcacaacttactcttggaactatattgtcctatcacaaaagctactttggtatgttgtgacaacat |
37526362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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