View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2312_low_28 (Length: 410)
Name: NF2312_low_28
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 42143723 - 42144075
Alignment:
| Q |
1 |
gatactcgggctcgttaattatttggtcagaggtttgaccctgactactgtgaatnnnnnnnntattttagaagaggtcaaacccttaaataaatctcag |
100 |
Q |
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| T |
42143723 |
gatacttgggctcgttaatcatttggtccgaggtttggccctgactactgtgaataaaaaaaatattttagaagaggtcaaacccttaaataaatctgag |
42143822 |
T |
|
| Q |
101 |
atatcttaagaatctaaggtacatacttgcgcaagaggatacattggtttgccnnnnnnnnnnnnnnnnnncagaaggtgtgtcaaagtttagcaataca |
200 |
Q |
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| T |
42143823 |
atatcttaagaatctaaggtacatacttgcgcaagaggatacattggtttgccaaaaaaataaaaaataaacagaaggtgtgtcaaagtttagcaataca |
42143922 |
T |
|
| Q |
201 |
aagtccgagcttagtatcatcaattatcaaacaattcacgaatgagacaaaatccttcactatgctcagtctaagttattgatttcacacccgaaaggaa |
300 |
Q |
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|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42143923 |
aagtccaagcttagtatcatcagttatcaaacaattcacgaatgagacaaaatccttcactatgctcagtctaagttattgatttcacacccgaaaggaa |
42144022 |
T |
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| Q |
301 |
aaccaagttaaaaggatatcttatatagctgtaattttgaaatactaaaaatt |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42144023 |
aaccaagttaaaaggatatcttatatagctgtaattttgaaatactaaaaatt |
42144075 |
T |
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