View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2312_low_34 (Length: 383)
Name: NF2312_low_34
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 103; Significance: 4e-51; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 193 - 321
Target Start/End: Complemental strand, 1653147 - 1653026
Alignment:
| Q |
193 |
tggcatctctacaggcaacaaacctataggaatcacaggcttccctactagtttcttgtataggttcagatattcaccttcgatgttcgatctcatagca |
292 |
Q |
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| T |
1653147 |
tggcatctctacaggcaacaaacctataggaatcacaggcttccctactagtttcttgtataggttcagatattcacctt-------cgatctcatagca |
1653055 |
T |
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| Q |
293 |
actgcaacatattatagatttagcagcat |
321 |
Q |
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| T |
1653054 |
actgcaacatattatagatttagcagcat |
1653026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 193 - 321
Target Start/End: Complemental strand, 1741523 - 1741402
Alignment:
| Q |
193 |
tggcatctctacaggcaacaaacctataggaatcacaggcttccctactagtttcttgtataggttcagatattcaccttcgatgttcgatctcatagca |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1741523 |
tggcatctctacaggcaacaaacctataggaatcacaggcttccctactagtttcttgtataggttcagatattcacctt-------cgatctcatagca |
1741431 |
T |
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| Q |
293 |
actgcaacatattatagatttagcagcat |
321 |
Q |
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| T |
1741430 |
actgcaacatattatagatttagcagcat |
1741402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 193 - 321
Target Start/End: Complemental strand, 11079953 - 11079832
Alignment:
| Q |
193 |
tggcatctctacaggcaacaaacctataggaatcacaggcttccctactagtttcttgtataggttcagatattcaccttcgatgttcgatctcatagca |
292 |
Q |
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||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||| ||| |||||||| |
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| T |
11079953 |
tggcatctctacaaccaacaaacctataggaatcacatgcttcccaactagtttcttgtatagattcagatattcaccttcaatg-------tcatagca |
11079861 |
T |
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| Q |
293 |
actgcaacatattatagatttagcagcat |
321 |
Q |
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|||||||||||||| || ||||||||||| |
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| T |
11079860 |
actgcaacatattacagctttagcagcat |
11079832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 319 - 368
Target Start/End: Complemental strand, 1652503 - 1652454
Alignment:
| Q |
319 |
catgaacaccagctttggctaaggcgattgaaagtttgaaaaatggtatt |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1652503 |
catgaacaccagctttggctaaggcgattgaaagtttgaaaaatggtatt |
1652454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 319 - 368
Target Start/End: Complemental strand, 1740879 - 1740830
Alignment:
| Q |
319 |
catgaacaccagctttggctaaggcgattgaaagtttgaaaaatggtatt |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1740879 |
catgaacaccagctttggctaaggcgattgaaagtttgaaaaatggtatt |
1740830 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 319 - 368
Target Start/End: Complemental strand, 11070675 - 11070626
Alignment:
| Q |
319 |
catgaacaccagctttggctaaggcgattgaaagtttgaaaaatggtatt |
368 |
Q |
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|
||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
11070675 |
catgaacaccagctttggctaaggctattgaaagtttgaaaaatggtatt |
11070626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 193 - 321
Target Start/End: Original strand, 28001546 - 28001667
Alignment:
| Q |
193 |
tggcatctctacaggcaacaaacctataggaatcacaggcttccctactagtttcttgtataggttcagatattcaccttcgatgttcgatctcatagca |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
28001546 |
tggcatctctacaggcaacaaacctataggaatcacaggcttccctactagtttcttgtataggttcagatattcacc-------ttcgatctcatagca |
28001638 |
T |
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| Q |
293 |
actgcaacatattatagatttagcagcat |
321 |
Q |
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|
||||||||||||||||||||||||||||| |
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| T |
28001639 |
actgcaacatattatagatttagcagcat |
28001667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 319 - 368
Target Start/End: Original strand, 28002189 - 28002238
Alignment:
| Q |
319 |
catgaacaccagctttggctaaggcgattgaaagtttgaaaaatggtatt |
368 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28002189 |
catgaacaccagctttcgctaaggcgattgaaagtttgaaaaatggtatt |
28002238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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