View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2312_low_35 (Length: 381)
Name: NF2312_low_35
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 21 - 371
Target Start/End: Complemental strand, 42394229 - 42393879
Alignment:
| Q |
21 |
gtggggtgcggcgatggaggacggagagagggagagcttaggagcggagtttaggaagacagcagcggagatggtgcagctcatagggaagccgaacttg |
120 |
Q |
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| T |
42394229 |
gtggggtgcggcgatggaggacggtgagagggagagcttaggagcggaatttaggaagacagcagcagagatggtgcagctcatagggaagccgaacttg |
42394130 |
T |
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| Q |
121 |
tcggannnnnnncctgcgttggctcggtttgatttgcagggtattgtgaaagatatgaatcttttggtgcctcgttttgatggaatatttgaaaagatga |
220 |
Q |
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| T |
42394129 |
tcagatttttttcctgcgctggctcggtttgatttgcagggtattgtgaaagatatgaatcttttggtgcctcgttttgatggaatatttgaaaagatga |
42394030 |
T |
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| Q |
221 |
ttggtgaacgaatggtgaaggatgtagaaggaaaggagagtgaaagtaaggattttttgcagtttttgttgaatttgaaggaggaaggtgattccaagac |
320 |
Q |
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| T |
42394029 |
ttggtgaacgaatggtgaaggatgtagaaggaaaggagagtgaaagtaaggattttttgcagtttttgttgaatttgaaggaggaaggtgattccaagac |
42393930 |
T |
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| Q |
321 |
accattcacaagcacccacgtgaaggctcttctcctggtatgctacctttg |
371 |
Q |
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| T |
42393929 |
accattcacaagcacccacgtgaaggctcttctcctggtatgctacctttg |
42393879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 21 - 371
Target Start/End: Complemental strand, 42378314 - 42377961
Alignment:
| Q |
21 |
gtggggtgcggcgatggaggacggagagagggagagcttaggagcggagtttaggaagacagcagcggagatggtgcagctcatagggaagccgaacttg |
120 |
Q |
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| T |
42378314 |
gtggggtgcgggggtggaaggagaagagagggagagtttaggggcggagtttagggaggcggtggcggagatggtgcagctattggggaagccgaatttg |
42378215 |
T |
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| Q |
121 |
tcggannnnnnncctgcgttggctcggtttgatttgcagggtattgtgaaagatatgaatcttttggtgcctcgttttgatggaatatttgaaaagatga |
220 |
Q |
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| T |
42378214 |
tcggatttttttcctgggttggcccggtttgatttgcagggtgttgtgaaagatatgaatgctttggtgcctcgctttgatgggatatttgagaagatga |
42378115 |
T |
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| Q |
221 |
ttggtgaacgaatggtgaaggatgtagaaggaaaggag---agtgaaagtaaggattttttgcagtttttgttgaatttgaaggaggaaggtgattccaa |
317 |
Q |
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| T |
42378114 |
ttggtgaacgattgaagaaggaagaggatgggaaggagaataatgggagtagggactttctgcagtttttgttgaatttgaaggaggagggtgattctaa |
42378015 |
T |
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| Q |
318 |
gacaccattcacaagcacccacgtgaaggctcttctcctggtatgctacctttg |
371 |
Q |
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| T |
42378014 |
gacaccgtttacaaatactcatgttaaggctctactcatggtatgctacttttg |
42377961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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