View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2312_low_36 (Length: 380)
Name: NF2312_low_36
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_low_36 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 9 - 364
Target Start/End: Complemental strand, 10044480 - 10044125
Alignment:
| Q |
9 |
agcataggtttcaaaagattagcagcatccattgatccttgacattgaccggcaccgagaacaagatgaatttcatcaatgaaaacaataaccttccctt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10044480 |
agcataggtttcaaaagattagcagcatccattgatccttgacattgaccggcaccgagaacaagatgaatttcatcaatgaaaacaataaccttccctt |
10044381 |
T |
|
| Q |
109 |
cagcatcttccacttctttcaaaactgccttcaacctttgttcaaattgtcccctatactgagtaccagcgactaacgctcccatatccaaagcaaataa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10044380 |
cagcatcttccacttctttcaaaactgccttcaacctttgttcaaattgtcccctatactgagtaccagcgactaacgctcccatatccaaagcaaataa |
10044281 |
T |
|
| Q |
209 |
tctaacatcggcaagattactaggaacatctcctctaactattctcttagccaacccttcaacaacagctgttttaccaacacctggctcacctataata |
308 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10044280 |
cctaacatcagcaagattgctaggaacatctcctctaactattctcttagccagcccttcaacaacagctgttttaccaacacctggctcacctataata |
10044181 |
T |
|
| Q |
309 |
acaggattgttctttgtccttcttgataaaatcctcacaacccttcttatctcttc |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10044180 |
acaggattgttctttgtccttcttgataaaatcctcacaacccttcttatctcttc |
10044125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 21 - 364
Target Start/End: Complemental strand, 45466580 - 45466237
Alignment:
| Q |
21 |
aaaagattagcagcatccattgatccttgacattgaccggcaccgagaacaagatgaatttcatcaatgaaaacaataaccttcccttcagcatcttcca |
120 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||| || || |||||||||||||| ||||||||||||| |||||||||||||||||| ||||| | |
|
|
| T |
45466580 |
aaaagattagcagcatccattgatccttctgttctaccagctccaagaacaagatgaatctcatcaatgaaaagaataaccttcccttcagcttcttcaa |
45466481 |
T |
|
| Q |
121 |
cttctttcaaaactgccttcaacctttgttcaaattgtcccctatactgagtaccagcgactaacgctcccatatccaaagcaaataatctaacatcggc |
220 |
Q |
| |
|
||||||||||||| ||||||||||| | |||||||| ||||||||||| | |||||| || || ||||||||||||| ||||| ||| |||||||| || |
|
|
| T |
45466480 |
cttctttcaaaacagccttcaacctctcttcaaattctcccctatacttcgcaccagcaaccaatgctcccatatccagagcaattaacctaacatcagc |
45466381 |
T |
|
| Q |
221 |
aagattactaggaacatctcctctaactattctcttagccaacccttcaacaacagctgttttaccaacacctggctcacctataataacaggattgttc |
320 |
Q |
| |
|
|||||| ||||||||||| |||||||| || |||| ||||||||||||||||||||| ||||| |||||||| |||||||| |||| ||| ||||| ||| |
|
|
| T |
45466380 |
aagattgctaggaacatcacctctaacaatcctctgagccaacccttcaacaacagcagttttcccaacaccaggctcaccaataagaactggattattc |
45466281 |
T |
|
| Q |
321 |
tttgtccttcttgataaaatcctcacaacccttcttatctcttc |
364 |
Q |
| |
|
|| ||||| ||||| |||||||||||||| |||| |||||||| |
|
|
| T |
45466280 |
ttagtcctccttgacaaaatcctcacaactcttcgaatctcttc |
45466237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University