View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2312_low_4 (Length: 669)

Name: NF2312_low_4
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2312_low_4
NF2312_low_4
[»] chr2 (1 HSPs)
chr2 (18-663)||(5253510-5254158)


Alignment Details
Target: chr2 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 18 - 663
Target Start/End: Original strand, 5253510 - 5254158
Alignment:
Q  18 atcattagctaccaaaaacttcagaacctatcctagatctcaagaagaataatcaactttataaaaatcacttaattttgtcatgtatatgtttcattgc 117  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5253510 atcattagctaccaaaaacttcagaacctatcctagatcataagaagaataatcaactttataaaaatcacttaattttgtcatgtatatgtttcattgg 5253609  T
Q  118 tcgatcacttggtttaatattttgggaaaatgaaagtattaccacattttcctaaaaatgttttttaatgtttgccgactcgtttcaattcttgaagaaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||    
T  5253610 tcgatcacttggtttaatattttgggaaaatgaaagtattatcacattttcctaaaaatattttttaatgtttgacgactcgttttaattcttgaagaaa 5253709  T
Q  218 agttgaatattcaattttctaagtgaataaataaaagcagttcagtcctaatacaaaataaattggaacaatttagtctctacatgatcaactattagaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5253710 agttgaatattcaattttctaagtgaataaataaaagcagttcagtcctaatacaaaataaattggaacaatttagtctctacatgatcaactattagaa 5253809  T
Q  318 agttgatttttattataatgatatcattttaaaaaagacaattaggtctcctaacagtaatttaaaagagacaatatgtttttgacaataattaaaaatg 417  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5253810 aattgatttttattataatgatatcattttaaaaaagacaattaggtctcctaacagtaatttaaaagagacaatatgtttttgacaataattaaaaatg 5253909  T
Q  418 gggaaattgatcccaacaaaagaaaatattcataaatagttctttcatcttagaacc---aaannnnnnnnnnnnnnnnnngaatgtaaaagaagaaaag 514  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||   |||                  |||||||||||||||||||    
T  5253910 gggaaattgatcctaacaaaagaaaatattcataaatagttctttcatcttagaaccaaaaaaaaaaaaaaatgattttttgaatgtaaaagaagaaaag 5254009  T
Q  515 aacatgagctattgatttaagaaaaaattgttcatttttaattattttcagggatcaaattgtccctttttaattatttacgaaggcaattgtccatatt 614  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  5254010 aacatgagctattgatttaaaaaaaaattgttcatttttaattattttcagggatcgaattgtccctttttaattatttacgaagacaattgtccatatt 5254109  T
Q  615 tttctcattatgcctacaaatatgagcacaagtcactcattcatctcac 663  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  5254110 tttctcattatgcctacaaatatgagcacaagtcacacattcatttcac 5254158  T

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