View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2312_low_42 (Length: 355)

Name: NF2312_low_42
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2312_low_42
NF2312_low_42
[»] chr7 (9 HSPs)
chr7 (64-339)||(3408925-3409203)
chr7 (10-64)||(26090761-26090815)
chr7 (10-64)||(40923780-40923834)
chr7 (10-66)||(12404776-12404832)
chr7 (10-64)||(42057819-42057873)
chr7 (10-63)||(8214117-8214170)
chr7 (15-64)||(11300463-11300512)
chr7 (10-66)||(2027041-2027097)
chr7 (10-66)||(30603633-30603689)
[»] chr5 (5 HSPs)
chr5 (10-66)||(17939725-17939781)
chr5 (10-66)||(22249030-22249086)
chr5 (10-64)||(14615747-14615801)
chr5 (10-64)||(30780318-30780372)
chr5 (279-311)||(5195116-5195148)
[»] scaffold0606 (1 HSPs)
scaffold0606 (10-64)||(434-488)
[»] chr3 (5 HSPs)
chr3 (10-64)||(51854585-51854639)
chr3 (10-63)||(50656841-50656894)
chr3 (10-64)||(51848447-51848501)
chr3 (10-63)||(53572102-53572155)
chr3 (279-311)||(16991903-16991935)
[»] chr8 (5 HSPs)
chr8 (10-63)||(35033148-35033201)
chr8 (10-63)||(4521547-4521600)
chr8 (10-63)||(33828640-33828692)
chr8 (10-63)||(14765060-14765113)
chr8 (15-63)||(14562913-14562961)
[»] scaffold0041 (1 HSPs)
scaffold0041 (10-64)||(49261-49315)
[»] chr6 (4 HSPs)
chr6 (10-63)||(21897084-21897137)
chr6 (10-64)||(34134730-34134784)
chr6 (10-63)||(25463134-25463187)
chr6 (10-64)||(1069913-1069967)
[»] chr2 (5 HSPs)
chr2 (10-63)||(35584618-35584671)
chr2 (10-64)||(72242-72294)
chr2 (10-63)||(20964134-20964187)
chr2 (10-63)||(30197347-30197400)
chr2 (15-63)||(4072366-4072414)
[»] chr1 (5 HSPs)
chr1 (10-63)||(33684978-33685031)
chr1 (15-66)||(26739887-26739938)
chr1 (15-63)||(24065573-24065621)
chr1 (288-328)||(36398886-36398926)
chr1 (279-323)||(42735936-42735980)
[»] chr4 (3 HSPs)
chr4 (10-63)||(15471381-15471434)
chr4 (10-63)||(35149923-35149976)
chr4 (279-311)||(2860703-2860735)


Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 64 - 339
Target Start/End: Complemental strand, 3409203 - 3408925
Alignment:
Q  64 aaaggggcccttagacggagaaaagaaaaagcatgcctcgaatttaactttccatatgaagtgtgaggccacactaacgcatcagcaagcggccctttag 163  Q
    |||||||||||  |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3409203 aaaggggccctcggacggagaaaagaaaaagcatgcctcaaatttaactttccatctgaagtgtgaggccacactaacgcatcagcaagcggccctttag 3409104  T
Q  164 gtaacactataacatataaacggtcttttatttcataatatcgattttatatgtcaactacaaactagaggcttgcgaaag---nnnnnnnnnngtcaat 260  Q
    | ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||             ||||||    
T  3409103 gcaacactatagcatctaaacggtcttttatttcataatatcgattttatatgtcaactacaaactagaggcttgcaaaagttttttttttttggtcaat 3409004  T
Q  261 tagactagtgactagtagtcacacattttaaatatagagaagtgagatgtccgaaattcaaactccaatctttaaatat 339  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3409003 tagactagtaactagtagtcacacattttaaatatagagaagtgagatgtccgaaattcaaactccaatctttaaatat 3408925  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 26090761 - 26090815
Alignment:
Q  10 attattctgatgtatttatgctattttactgcttctgggaaacggggtgttacaa 64  Q
    |||| ||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  26090761 attactctgatgtatttatgctattttactgcttttgggtaacggggtgttacaa 26090815  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 40923780 - 40923834
Alignment:
Q  10 attattctgatgtatttatgctattttactgcttctgggaaacggggtgttacaa 64  Q
    |||| ||||||||||||||||||||||| ||||| |||| |||||||||||||||    
T  40923780 attactctgatgtatttatgctattttattgcttttgggtaacggggtgttacaa 40923834  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 12404776 - 12404832
Alignment:
Q  10 attattctgatgtatttatgctattttactgcttctgggaaacggggtgttacaaaa 66  Q
    |||| ||||||||||||||||||||||| ||| | |||| |||||||||||||||||    
T  12404776 attactctgatgtatttatgctattttattgcatttgggtaacggggtgttacaaaa 12404832  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 42057873 - 42057819
Alignment:
Q  10 attattctgatgtatttatgctattttactgcttctgggaaacggggtgttacaa 64  Q
    |||| |||||||| | ||||||||||||||| || |||| |||||||||||||||    
T  42057873 attactctgatgtttatatgctattttactgtttttgggtaacggggtgttacaa 42057819  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 8214117 - 8214170
Alignment:
Q  10 attattctgatgtatttatgctattttactgcttctgggaaacggggtgttaca 63  Q
    |||| |||||||| | ||||||||||||||| || |||| ||||||||||||||    
T  8214117 attactctgatgtttatatgctattttactgtttttgggtaacggggtgttaca 8214170  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 11300463 - 11300512
Alignment:
Q  15 tctgatgtatttatgctattttactgcttctgggaaacggggtgttacaa 64  Q
    |||||||| | |||||||||||| ||||| |||| |||||||||||||||    
T  11300463 tctgatgtttatatgctattttattgcttttgggtaacggggtgttacaa 11300512  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 2027041 - 2027097
Alignment:
Q  10 attattctgatgtatttatgctattttactgcttctgggaaacggggtgttacaaaa 66  Q
    |||| |||||||||| |||||||| ||| || || |||| |||||||||||||||||    
T  2027041 attactctgatgtatatatgctatgttattgtttttgggtaacggggtgttacaaaa 2027097  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 30603633 - 30603689
Alignment:
Q  10 attattctgatgtatttatgctattttactgcttctgggaaacggggtgttacaaaa 66  Q
    |||| |||||||||| | |||||||| | ||||| |||| |||||||||||||||||    
T  30603633 attactctgatgtatgtttgctatttaattgcttttgggtaacggggtgttacaaaa 30603689  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 17939725 - 17939781
Alignment:
Q  10 attattctgatgtatttatgctattttactgcttctgggaaacggggtgttacaaaa 66  Q
    |||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  17939725 attactctgatgtatttatgctattttactgcttatgggtaacggggtgttacaaaa 17939781  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 22249030 - 22249086
Alignment:
Q  10 attattctgatgtatttatgctattttactgcttctgggaaacggggtgttacaaaa 66  Q
    |||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  22249030 attactctgatgtatttatgctattttactgcttttgggtaacggggtgttacaaaa 22249086  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 14615747 - 14615801
Alignment:
Q  10 attattctgatgtatttatgctattttactgcttctgggaaacggggtgttacaa 64  Q
    |||| ||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  14615747 attactctgatgtatttatgctattttactgcttttgggtaacggggtgttacaa 14615801  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 30780372 - 30780318
Alignment:
Q  10 attattctgatgtatttatgctattttactgcttctgggaaacggggtgttacaa 64  Q
    |||| |||||||||| |||||||||| | ||||| |||| |||||||||||||||    
T  30780372 attactctgatgtatatatgctatttaattgcttttgggtaacggggtgttacaa 30780318  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 311
Target Start/End: Original strand, 5195116 - 5195148
Alignment:
Q  279 tcacacattttaaatatagagaagtgagatgtc 311  Q
    |||||||||||||||||||||||||||| ||||    
T  5195116 tcacacattttaaatatagagaagtgaggtgtc 5195148  T

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Target: scaffold0606 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 434 - 488
Alignment:
Q  10 attattctgatgtatttatgctattttactgcttctgggaaacggggtgttacaa 64  Q
    |||| ||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  434 attactctgatgtatttatgctattttactgcttttgggtaacggggtgttacaa 488  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 51854585 - 51854639
Alignment:
Q  10 attattctgatgtatttatgctattttactgcttctgggaaacggggtgttacaa 64  Q
    |||| ||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  51854585 attactctgatgtatttatgctattttactgcttttgggtaacggggtgttacaa 51854639  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 50656841 - 50656894
Alignment:
Q  10 attattctgatgtatttatgctattttactgcttctgggaaacggggtgttaca 63  Q
    |||| ||||||||||||||||||||||| |||||  ||| ||||||||||||||    
T  50656841 attactctgatgtatttatgctattttattgctttcgggtaacggggtgttaca 50656894  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 51848501 - 51848447
Alignment:
Q  10 attattctgatgtatttatgctattttactgcttctgggaaacggggtgttacaa 64  Q
    |||| |||||||| | |||||||||||| ||||| |||| |||||||||||||||    
T  51848501 attactctgatgtttatatgctattttattgcttttgggtaacggggtgttacaa 51848447  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 53572102 - 53572155
Alignment:
Q  10 attattctgatgtatttatgctattttactgcttctgggaaacggggtgttaca 63  Q
    |||| |||||||| | |||||||||||| ||||| |||| ||||||||||||||    
T  53572102 attactctgatgtttatatgctattttattgcttttgggtaacggggtgttaca 53572155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 311
Target Start/End: Complemental strand, 16991935 - 16991903
Alignment:
Q  279 tcacacattttaaatatagagaagtgagatgtc 311  Q
    ||||||||||||||||| |||||||||||||||    
T  16991935 tcacacattttaaatatggagaagtgagatgtc 16991903  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 35033201 - 35033148
Alignment:
Q  10 attattctgatgtatttatgctattttactgcttctgggaaacggggtgttaca 63  Q
    |||| ||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  35033201 attactctgatgtatttatgctattttactgcttttgggtaacggggtgttaca 35033148  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 4521547 - 4521600
Alignment:
Q  10 attattctgatgtatttatgctattttactgcttctgggaaacggggtgttaca 63  Q
    |||| ||||||||||||||| ||||||||||||| |||| ||||||||||||||    
T  4521547 attactctgatgtatttatgttattttactgcttatgggtaacggggtgttaca 4521600  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 33828692 - 33828640
Alignment:
Q  10 attattctgatgtatttatgctattttactgcttctgggaaacggggtgttaca 63  Q
    |||| |||||||||||||||||||||||||| || |||| ||||||||||||||    
T  33828692 attactctgatgtatttatgctattttactg-ttttgggtaacggggtgttaca 33828640  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 14765113 - 14765060
Alignment:
Q  10 attattctgatgtatttatgctattttactgcttctgggaaacggggtgttaca 63  Q
    |||| |||||||| | |||||||||||| ||||| |||| ||||||||||||||    
T  14765113 attactctgatgtttatatgctattttattgcttttgggtaacggggtgttaca 14765060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 14562961 - 14562913
Alignment:
Q  15 tctgatgtatttatgctattttactgcttctgggaaacggggtgttaca 63  Q
    |||||||| | |||||||||||| ||||| |||| ||||||||||||||    
T  14562961 tctgatgtttatatgctattttattgcttttgggtaacggggtgttaca 14562913  T

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Target: scaffold0041 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 49315 - 49261
Alignment:
Q  10 attattctgatgtatttatgctattttactgcttctgggaaacggggtgttacaa 64  Q
    |||| ||||||||||||||||||||||| ||||| |||| |||||||||||||||    
T  49315 attactctgatgtatttatgctattttattgcttttgggtaacggggtgttacaa 49261  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 21897084 - 21897137
Alignment:
Q  10 attattctgatgtatttatgctattttactgcttctgggaaacggggtgttaca 63  Q
    |||| ||||||||||||||||||||||||||||| |||| |||||||| |||||    
T  21897084 attactctgatgtatttatgctattttactgcttttgggtaacggggtattaca 21897137  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 34134730 - 34134784
Alignment:
Q  10 attattctgatgtatttatgctattttactgcttctgggaaacggggtgttacaa 64  Q
    |||| ||||||||||||||||||||||| ||| | |||| |||||||||||||||    
T  34134730 attactctgatgtatttatgctattttattgcatttgggtaacggggtgttacaa 34134784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 25463187 - 25463134
Alignment:
Q  10 attattctgatgtatttatgctattttactgcttctgggaaacggggtgttaca 63  Q
    |||| ||||||||||||||||||||||| ||| | |||| ||||||||||||||    
T  25463187 attactctgatgtatttatgctattttattgcatttgggtaacggggtgttaca 25463134  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 1069967 - 1069913
Alignment:
Q  10 attattctgatgtatttatgctattttactgcttctgggaaacggggtgttacaa 64  Q
    |||| |||||||| | |||||||||||| ||||| |||| |||||||||||||||    
T  1069967 attactctgatgtttatatgctattttattgcttttgggtaacggggtgttacaa 1069913  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 35584671 - 35584618
Alignment:
Q  10 attattctgatgtatttatgctattttactgcttctgggaaacggggtgttaca 63  Q
    |||| ||||||||||||||||||||||| ||||| |||| ||||||||||||||    
T  35584671 attactctgatgtatttatgctattttattgcttttgggtaacggggtgttaca 35584618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 72242 - 72294
Alignment:
Q  10 attattctgatgtatttatgctattttactgcttctgggaaacggggtgttacaa 64  Q
    |||| ||||||||||||||||||||||||||  | |||| |||||||||||||||    
T  72242 attactctgatgtatttatgctattttactg--tttgggtaacggggtgttacaa 72294  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 20964187 - 20964134
Alignment:
Q  10 attattctgatgtatttatgctattttactgcttctgggaaacggggtgttaca 63  Q
    |||| |||||||| | |||||||||||| ||||| |||| ||||||||||||||    
T  20964187 attactctgatgtttatatgctattttattgcttttgggtaacggggtgttaca 20964134  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 30197347 - 30197400
Alignment:
Q  10 attattctgatgtatttatgctattttactgcttctgggaaacggggtgttaca 63  Q
    |||| |||||||| | |||||||||||| ||||| |||| ||||||||||||||    
T  30197347 attactctgatgtttatatgctattttattgcttttgggtaacggggtgttaca 30197400  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 4072366 - 4072414
Alignment:
Q  15 tctgatgtatttatgctattttactgcttctgggaaacggggtgttaca 63  Q
    |||||||| | |||||||||||| ||||| |||| ||||||||||||||    
T  4072366 tctgatgtttatatgctattttattgcttttgggtaacggggtgttaca 4072414  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 33684978 - 33685031
Alignment:
Q  10 attattctgatgtatttatgctattttactgcttctgggaaacggggtgttaca 63  Q
    |||| ||||||||||||||||||||||| ||||| |||| ||||||||||||||    
T  33684978 attactctgatgtatttatgctattttattgcttttgggtaacggggtgttaca 33685031  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 26739887 - 26739938
Alignment:
Q  15 tctgatgtatttatgctattttactgcttctgggaaacggggtgttacaaaa 66  Q
    |||||||| | |||||||||||| ||||| |||| |||||||||||||||||    
T  26739887 tctgatgtttatatgctattttattgcttttgggtaacggggtgttacaaaa 26739938  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 24065621 - 24065573
Alignment:
Q  15 tctgatgtatttatgctattttactgcttctgggaaacggggtgttaca 63  Q
    |||||||| | |||||||||||| ||||| |||| ||||||||||||||    
T  24065621 tctgatgtttatatgctattttattgcttttgggtaacggggtgttaca 24065573  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 328
Target Start/End: Original strand, 36398886 - 36398926
Alignment:
Q  288 ttaaatatagagaagtgagatgtccgaaattcaaactccaa 328  Q
    |||||||| |||||||||||||||||  |||||||||||||    
T  36398886 ttaaatatggagaagtgagatgtccgggattcaaactccaa 36398926  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 323
Target Start/End: Complemental strand, 42735980 - 42735936
Alignment:
Q  279 tcacacattttaaatatagagaagtgagatgtccgaaattcaaac 323  Q
    ||||||||||||||| |||||||||| | |||||| |||||||||    
T  42735980 tcacacattttaaatgtagagaagtggggtgtccggaattcaaac 42735936  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 15471381 - 15471434
Alignment:
Q  10 attattctgatgtatttatgctattttactgcttctgggaaacggggtgttaca 63  Q
    |||| |||||||||| |||||||||||| ||||| |||| ||||||||||||||    
T  15471381 attactctgatgtatatatgctattttattgcttttgggtaacggggtgttaca 15471434  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 35149923 - 35149976
Alignment:
Q  10 attattctgatgtatttatgctattttactgcttctgggaaacggggtgttaca 63  Q
    |||| |||||||| | |||||||||||| ||||| |||| ||||||||||||||    
T  35149923 attactctgatgtttatatgctattttattgcttttgggtaacggggtgttaca 35149976  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 311
Target Start/End: Original strand, 2860703 - 2860735
Alignment:
Q  279 tcacacattttaaatatagagaagtgagatgtc 311  Q
    ||||||||||||||||| |||||||||||||||    
T  2860703 tcacacattttaaatatggagaagtgagatgtc 2860735  T

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