View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2312_low_46 (Length: 340)

Name: NF2312_low_46
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2312_low_46
NF2312_low_46
[»] chr6 (3 HSPs)
chr6 (15-149)||(6061825-6061959)
chr6 (262-330)||(6062072-6062140)
chr6 (23-149)||(19231106-19231234)
[»] chr4 (5 HSPs)
chr4 (23-147)||(38645888-38646012)
chr4 (15-149)||(25727516-25727650)
chr4 (15-149)||(1601749-1601883)
chr4 (83-149)||(2183069-2183137)
chr4 (25-62)||(2183033-2183070)
[»] chr5 (8 HSPs)
chr5 (15-149)||(40249240-40249374)
chr5 (15-149)||(39057343-39057477)
chr5 (23-149)||(28466530-28466656)
chr5 (30-149)||(28299069-28299188)
chr5 (23-142)||(21063573-21063692)
chr5 (23-146)||(12676342-12676465)
chr5 (23-145)||(33365402-33365525)
chr5 (15-71)||(16551820-16551876)
[»] chr3 (4 HSPs)
chr3 (15-149)||(55229713-55229846)
chr3 (15-149)||(53220551-53220691)
chr3 (25-149)||(35161843-35161967)
chr3 (23-141)||(14779158-14779276)
[»] chr1 (7 HSPs)
chr1 (23-144)||(12026053-12026174)
chr1 (15-145)||(11022246-11022376)
chr1 (23-145)||(40119218-40119340)
chr1 (26-137)||(9955637-9955748)
chr1 (16-106)||(33051829-33051919)
chr1 (80-149)||(14500246-14500316)
chr1 (23-96)||(14500420-14500492)
[»] scaffold0020 (1 HSPs)
scaffold0020 (23-147)||(133050-133174)
[»] chr2 (4 HSPs)
chr2 (23-149)||(29160288-29160411)
chr2 (61-149)||(27082459-27082549)
chr2 (15-71)||(27016214-27016270)
chr2 (15-71)||(27082260-27082316)
[»] chr7 (3 HSPs)
chr7 (23-149)||(28711671-28711798)
chr7 (25-147)||(20954184-20954305)
chr7 (15-106)||(47953409-47953500)
[»] chr8 (4 HSPs)
chr8 (15-144)||(34985472-34985599)
chr8 (25-149)||(12822362-12822487)
chr8 (23-149)||(27779237-27779363)
chr8 (291-325)||(10031017-10031051)
[»] scaffold0440 (1 HSPs)
scaffold0440 (34-149)||(2556-2671)


Alignment Details
Target: chr6 (Bit Score: 135; Significance: 3e-70; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 15 - 149
Target Start/End: Original strand, 6061825 - 6061959
Alignment:
Q  15 atttataagggtatgagtataattgttgggatgtaggataatattttcttttattatgtaggtctaaatcaaacacttattatttgacaaaagtaaagag 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6061825 atttataagggtatgagtataattgttgggatgtaggataatattttcttttattatgtaggtctaaatcaaacacttattatttgacaaaagtaaagag 6061924  T
Q  115 taaatggacaagttaggtcaaacccacacatctat 149  Q
    |||||||||||||||||||||||||||||||||||    
T  6061925 taaatggacaagttaggtcaaacccacacatctat 6061959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 6062072 - 6062140
Alignment:
Q  262 gagtcgagcctccaattttattggaacgaccaacaacgttaaaactcttaggaagagcttgccgttcat 330  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6062072 gagtcgagcctccaattttattggaacgaccaacaacattaaaactcttaggaagagcttgccgttcat 6062140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 149
Target Start/End: Original strand, 19231106 - 19231234
Alignment:
Q  23 gggtatgagtataattgttgggatgtaggataatattttcttttattatgtaggtctaaatcaaacacttattatttgacaaaagtaaagagtaaatgga 122  Q
    ||||| ||||||||||||||  |||||| |||||||||||| || |||||||| || |||||||||| |||||||||||||||| |||||| ||||||||    
T  19231106 gggtacgagtataattgttga-atgtagaataatattttctgttgttatgtagctcaaaatcaaacatttattatttgacaaaa-taaagaataaatgga 19231203  T
Q  123 caag----ttaggtcaaacccacacatctat 149  Q
    ||||    ||||| |||||||||||||||||    
T  19231204 caagttaattaggccaaacccacacatctat 19231234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 23 - 147
Target Start/End: Complemental strand, 38646012 - 38645888
Alignment:
Q  23 gggtatgagtataattgttgggatgtaggataatattttcttttattatgtaggtctaaatcaaacacttattatttgacaaaagtaaagagtaaatgga 122  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38646012 gggtatgagtataattgttgggatgtaggataatattttcttttgttatgtaggtctaaatcaaacacttattatttgacaaaagtaaagagtaaatgga 38645913  T
Q  123 caagttaggtcaaacccacacatct 147  Q
    |||||||| ||||||||||||||||    
T  38645912 caagttagatcaaacccacacatct 38645888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 15 - 149
Target Start/End: Complemental strand, 25727650 - 25727516
Alignment:
Q  15 atttataagggtatgagtataattgttgggatgtaggataatattttcttttattatgtaggtctaaatcaaacacttattatttgacaaaagtaaagag 114  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  25727650 atttataagggtatgaatataattgttgggatgtatgataatattttcttttgttatgtaggtctaaatcaaatacttattatttgacaaaagtaaagag 25727551  T
Q  115 taaatggacaagttaggtcaaacccacacatctat 149  Q
    |||||||||||||||||| ||| ||||||||||||    
T  25727550 taaatggacaagttaggttaaatccacacatctat 25727516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 15 - 149
Target Start/End: Original strand, 1601749 - 1601883
Alignment:
Q  15 atttataagggtatgagtataattgttgggatgtaggataatattttcttttattatgtaggtctaaatcaaacacttattatttgacaaaagtaaagag 114  Q
    ||||||| || |||||||||||||||||| ||||| ||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||    
T  1601749 atttatagggatatgagtataattgttggaatgtaagataatattttctcttgttatgtaggtctaaatcaaacacttattattttacaaaagtaaagag 1601848  T
Q  115 taaatggacaagttaggtcaaacccacacatctat 149  Q
    |||||| |||||||||| |||||||||||||||||    
T  1601849 taaatgaacaagttaggccaaacccacacatctat 1601883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 2183069 - 2183137
Alignment:
Q  83 tcaaacacttattatttgacaaaag-taaagagtaaatggacaagttaggtcaaa-cccacacatctat 149  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||| |||| | |||||||||||    
T  2183069 tcaaacacttattatttgacaaaaaataaagagtaaatggacaagttaggccaaatctcacacatctat 2183137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 2183033 - 2183070
Alignment:
Q  25 gtatgagtataattgttgggatgtaggataatattttc 62  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  2183033 gtatgagtataattgttgggatgtaagataatattttc 2183070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 8e-49; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 15 - 149
Target Start/End: Complemental strand, 40249374 - 40249240
Alignment:
Q  15 atttataagggtatgagtataattgttgggatgtaggataatattttcttttattatgtaggtctaaatcaaacacttattatttgacaaaagtaaagag 114  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||| |||| ||||||  ||||||||||||| ||||||||||||||||| |||||||    
T  40249374 atttataggggtatgagtataattgttcggatgtaggataatattttattttgttatgttagtctaaatcaaactcttattatttgacaaaaataaagag 40249275  T
Q  115 taaatggacaagttaggtcaaacccacacatctat 149  Q
    |||||||||||||||||||||||||| ||||||||    
T  40249274 taaatggacaagttaggtcaaacccatacatctat 40249240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 15 - 149
Target Start/End: Complemental strand, 39057477 - 39057343
Alignment:
Q  15 atttataagggtatgagtataattgttgggatgtaggataatattttcttttattatgtaggtctaaatcaaacacttattatttgacaaaagtaaagag 114  Q
    ||||||| |||||||||| ||||||||||||| |||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||| |||||||    
T  39057477 atttataggggtatgagtgtaattgttgggatataggataatattttcttttgctatgtaggtctaaatcaaacaattattatttgacaaaaataaagag 39057378  T
Q  115 taaatggacaagttaggtcaaacccacacatctat 149  Q
    ||||| ||||| ||||||||||||||| |||||||    
T  39057377 taaatagacaaattaggtcaaacccacgcatctat 39057343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 23 - 149
Target Start/End: Complemental strand, 28466656 - 28466530
Alignment:
Q  23 gggtatgagtataattgttgggatgtaggataatattttcttttattatgtaggtctaaatcaaacacttattatttgacaaaagtaaagagtaaatgga 122  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  28466656 gggtatgcgtataattgttgggatgtaggataatattttcttttgttatgtaagtctaaatcaaacacttattatttgacaaaagtaaagagtaaattga 28466557  T
Q  123 caagttaggtcaaacccacacatctat 149  Q
      ||||||| |||| ||||| ||||||    
T  28466556 atagttaggccaaatccacatatctat 28466530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 30 - 149
Target Start/End: Original strand, 28299069 - 28299188
Alignment:
Q  30 agtataattgttgggatgtaggataatattttcttttattatgtaggtctaaatcaaacacttattatttgacaaaagtaaagagtaaatggacaagtta 129  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||| |||||| |||||||||||||||||||||| |||||||||||| |||||||||    
T  28299069 agtataattgttgggatgtagtataatattttcttttattacgtagggctaaattaaacacttattatttgacaaaaataaagagtaaattgacaagtta 28299168  T
Q  130 ggtcaaacccacacatctat 149  Q
    || |||||||||| ||||||    
T  28299169 ggccaaacccacaaatctat 28299188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 23 - 142
Target Start/End: Original strand, 21063573 - 21063692
Alignment:
Q  23 gggtatgagtataattgttgggatgtaggataatattttcttttattatgtaggtctaaatcaaacacttattatttgacaaaagtaaagagtaaatgga 122  Q
    ||||||||||||||||| ||| ||||| |||||||||||||||| |||||| |||| ||||||||||||||||||||||||||| ||||||||||||| |    
T  21063573 gggtatgagtataattgctggtatgtaagataatattttcttttgttatgtgggtccaaatcaaacacttattatttgacaaaaataaagagtaaatgaa 21063672  T
Q  123 caagttaggtcaaacccaca 142  Q
    ||||||||||||||| ||||    
T  21063673 caagttaggtcaaactcaca 21063692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 23 - 146
Target Start/End: Complemental strand, 12676465 - 12676342
Alignment:
Q  23 gggtatgagtataattgttgggatgtaggataatattttcttttattatgtaggtctaaatcaaacacttattatttgacaaaagtaaagagtaaatgga 122  Q
    |||||| |||||||||||| |||||||| ||||| ||||||||| |||||| ||||||||||||||||||||||| |||||||| |||||||||||||||    
T  12676465 gggtataagtataattgtttggatgtagaataatgttttcttttgttatgtgggtctaaatcaaacacttattatctgacaaaaataaagagtaaatgga 12676366  T
Q  123 caagttaggtcaaacccacacatc 146  Q
    ||||| | | ||||||||||||||    
T  12676365 caagtaaagccaaacccacacatc 12676342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 23 - 145
Target Start/End: Complemental strand, 33365525 - 33365402
Alignment:
Q  23 gggtatgagtataattgttgggatgta--ggataatattttcttttattatgtaggtctaaatcaaacacttattatttgacaaaagtaaagagtaaatg 120  Q
    |||||| ||||||||||||||||| ||  ||||||||||||||||||||||||||||| ||||||||||||| || |||||||||| ||||||||||||     
T  33365525 gggtataagtataattgttgggatatataggataatattttcttttattatgtaggtccaaatcaaacacttgtt-tttgacaaaaataaagagtaaatt 33365427  T
Q  121 gacaagttaggtcaaacccacacat 145  Q
    || |||||||| |||||||||||||    
T  33365426 gataagttaggccaaacccacacat 33365402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 16551876 - 16551820
Alignment:
Q  15 atttataagggtatgagtataattgttgggatgtaggataatattttcttttattat 71  Q
    |||| ||||||| ||||||||| ||||||| |||||| |||  ||||||||||||||    
T  16551876 atttttaagggtgtgagtataagtgttggggtgtagggtaaagttttcttttattat 16551820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 15 - 149
Target Start/End: Complemental strand, 55229846 - 55229713
Alignment:
Q  15 atttataagggtatgagtataattgttgggatgtaggataatattttcttttattatgtaggtctaaatcaaacacttattatttgacaaaagtaaagag 114  Q
    ||||||| || ||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  55229846 atttatagggatatgagtataattgttgggatctag-ataatattttcttttgttatgtaggtctaaatcaaacacttattatttgataaaagtaaagag 55229748  T
Q  115 taaatggacaagttaggtcaaacccacacatctat 149  Q
    ||||||||||||||||| ||||  |||||||||||    
T  55229747 taaatggacaagttaggccaaaggcacacatctat 55229713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 15 - 149
Target Start/End: Complemental strand, 53220691 - 53220551
Alignment:
Q  15 atttataagggtatgagtataattgttgggatgtaggataatattttcttttattatgtaggtctaaatcaaacac-------ttattatttgacaaaag 107  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||       |||||||||| ||||||    
T  53220691 atttataggggtatgaatataattgttgggatgtaggataatattttcttttgttatgtaggtct-aatcaaacacttattaattattatttgtcaaaag 53220593  T
Q  108 taaagagtaaatggacaagttaggtcaaacccacacatctat 149  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  53220592 taaagagtaaatggacaagttaggtcaaacccacacatctat 53220551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 25 - 149
Target Start/End: Complemental strand, 35161967 - 35161843
Alignment:
Q  25 gtatgagtataattgttgggatgtaggataatattttcttttattatgtaggtctaaatcaaacacttattatttgacaaaagtaaagagtaaatggaca 124  Q
    |||| ||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||| |||||||||| |||||||||||| ||||    
T  35161967 gtataagtataattgttgggatgtaggataatatttccttttgttatgtaggtccaaatcaaacacttattgtttgacaaaaataaagagtaaattgaca 35161868  T
Q  125 agttaggtcaaacccacacatctat 149  Q
    ||||||||| |||||||||| ||||    
T  35161867 agttaggtcgaacccacacaactat 35161843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 23 - 141
Target Start/End: Original strand, 14779158 - 14779276
Alignment:
Q  23 gggtatgagtataattgttgggatgtaggataatattttcttttattatgtaggtctaaatcaaacacttattatttgacaaaagtaaagagtaaatgga 122  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||| |||||  |||||||||||||||||||||| |||| ||||||||| |||||    
T  14779158 gggtatgagtataattgttgggatgtagggtaatattttcttttgttatttaggttcaaatcaaacacttattatttgataaaaataaagagtagatgga 14779257  T
Q  123 caagttaggtcaaacccac 141  Q
    |||||| || |||||||||    
T  14779258 caagttcggccaaacccac 14779276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 8e-46; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 23 - 144
Target Start/End: Complemental strand, 12026174 - 12026053
Alignment:
Q  23 gggtatgagtataattgttgggatgtaggataatattttcttttattatgtaggtctaaatcaaacacttattatttgacaaaagtaaagagtaaatgga 122  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||| |||||||||||| |||||||||||| ||    
T  12026174 gggtatgagtataattgttgggatgtaggataatattttcttttgttatttaggtctaaattaaacacttactatttgacaaaaataaagagtaaattga 12026075  T
Q  123 caagttaggtcaaacccacaca 144  Q
    ||||||||| ||||||||||||    
T  12026074 caagttaggccaaacccacaca 12026053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 15 - 145
Target Start/End: Complemental strand, 11022376 - 11022246
Alignment:
Q  15 atttataagggtatgagtataattgttgggatgtaggataatattttcttttattatgtaggtctaaatcaaacacttattatttgacaaaagtaaagag 114  Q
    ||||||| |||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||| ||||||||  |||| |||||||    
T  11022376 atttataggggtatgagtataattgttgggatataggataacatcttcttttattatgtaggtctaaatcaaacactcattatttggtaaaaataaagag 11022277  T
Q  115 taaatggacaagttaggtcaaacccacacat 145  Q
    ||||||||||||||||  |||||||||||||    
T  11022276 taaatggacaagttagaccaaacccacacat 11022246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 23 - 145
Target Start/End: Original strand, 40119218 - 40119340
Alignment:
Q  23 gggtatgagtataattgttgggatgtaggataatattttcttttattatgtaggtctaaatcaaacacttattatttgacaaaagtaaagagtaaatgga 122  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||| |||||||| ||||||||||||| |||||||||||| ||    
T  40119218 gggtatgagtataattgttgggatgtaagataatattttcttttgttatgtaggtttaaattaaacacttgttatttgacaaaaataaagagtaaattga 40119317  T
Q  123 caagttaggtcaaacccacacat 145  Q
    |||||||||||||| | ||||||    
T  40119318 caagttaggtcaaatctacacat 40119340  T

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Target: chr1; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 26 - 137
Target Start/End: Original strand, 9955637 - 9955748
Alignment:
Q  26 tatgagtataattgttgggatgtaggataatattttcttttattatgtaggtctaaatcaaacacttattatttgacaaaagtaaagagtaaatggacaa 125  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||| || |||||||||||||||||||| |||||| |||||||||||| |||||    
T  9955637 tatgagtataattgttgggatgtaggataatattttattttgttatgtagatccaaatcaaacacttattattttacaaaaataaagagtaaattgacaa 9955736  T
Q  126 gttaggtcaaac 137  Q
    |||||| |||||    
T  9955737 gttaggccaaac 9955748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 33051829 - 33051919
Alignment:
Q  16 tttataagggtatgagtataattgttgggatgtaggataatattttcttttattatgtaggtctaaatcaaacacttattatttgacaaaa 106  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||| ||||||||||||    
T  33051829 tttataggggtatgagtataattgttgggatgtaggataatattttcttttgttttgtaggtctaaattaaacacttactatttgacaaaa 33051919  T

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Target: chr1; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 80 - 149
Target Start/End: Complemental strand, 14500316 - 14500246
Alignment:
Q  80 aaatcaaacacttattatttgacaaaagtaaa-gagtaaatggacaagttaggtcaaacccacacatctat 149  Q
    ||||||||||||||||||||||||||| |||| ||||||||||| |||||||| ||||| |||||||||||    
T  14500316 aaatcaaacacttattatttgacaaaaataaaagagtaaatggataagttaggccaaactcacacatctat 14500246  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 14500492 - 14500420
Alignment:
Q  23 gggtatgagtataattgttgggatgtaggataatattttcttttattatgtaggtctaaatcaaacacttatta 96  Q
    |||||||| |||||||||| | |||||||||| ||||| ||||| ||||||||||  |||||||||||||||||    
T  14500492 gggtatgaatataattgttagtatgtaggatactattt-cttttgttatgtaggttcaaatcaaacacttatta 14500420  T

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Target: scaffold0020 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 23 - 147
Target Start/End: Original strand, 133050 - 133174
Alignment:
Q  23 gggtatgagtataattgttgggatgtaggataatattttcttttattatgtaggtctaaatcaaacacttattatttgacaaaagtaaagagtaaatgga 122  Q
    |||||| |||||||||||||| ||||||| |||||||||||||| |||||||||||||||| ||||||||  |||||||||||| |||||||||||||||    
T  133050 gggtataagtataattgttggcatgtaggttaatattttcttttgttatgtaggtctaaattaaacacttcctatttgacaaaaataaagagtaaatgga 133149  T
Q  123 caagttaggtcaaacccacacatct 147  Q
    ||||||||| ||||| |||||||||    
T  133150 caagttaggccaaacacacacatct 133174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 23 - 149
Target Start/End: Original strand, 29160288 - 29160411
Alignment:
Q  23 gggtatgagtataattgttgggatgtaggataatattttcttttattatgtaggtctaaatcaaacacttattatttgacaaaagtaaagagtaaatgga 122  Q
    |||||||||||||||||||||||| |||||||||||   ||||| ||||||| |||||||||||||||||||||||| |||||| |||||| ||||||||    
T  29160288 gggtatgagtataattgttgggatataggataatat---cttttgttatgtaagtctaaatcaaacacttattatttaacaaaaataaagaataaatgga 29160384  T
Q  123 caagttaggtcaaacccacacatctat 149  Q
    ||||||||||||||| |||||||||||    
T  29160385 caagttaggtcaaacacacacatctat 29160411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 61 - 149
Target Start/End: Original strand, 27082459 - 27082549
Alignment:
Q  61 tcttttattatgtaggtctaaatcaaacacttattatttgacaaaagt--aaagagtaaatggacaagttaggtcaaacccacacatctat 149  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||  |||||||||||| |||||||||| |||||||||||||||||    
T  27082459 tcttttgttatgtagatctaaatcaaacacttattatttgacaaaagtaaaaagagtaaatgaacaagttaggccaaacccacacatctat 27082549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 27016214 - 27016270
Alignment:
Q  15 atttataagggtatgagtataattgttgggatgtaggataatattttcttttattat 71  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27016214 atttataggggtatgagtataattgttgggatgtaggataatattttcttttgttat 27016270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 27082260 - 27082316
Alignment:
Q  15 atttataagggtatgagtataattgttgggatgtaggataatattttcttttattat 71  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  27082260 atttataggggtatgagtatatttgttgggatgtaggataatattttcttttgttat 27082316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 23 - 149
Target Start/End: Original strand, 28711671 - 28711798
Alignment:
Q  23 gggtatgagtataattgttgggatgtaggataatattttcttttattatgtaggtctaaatcaaacacttatta-tttgacaaaagtaaagagtaaatgg 121  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||| |||||| ||||||||||||||||| ||||| |||| ||||||||||||||    
T  28711671 gggtatgagtataattgttgggatgtagaataatattttcttttgttatataggtccaaatcaaacacttattattttgataaaaataaagagtaaatgg 28711770  T
Q  122 acaagttaggtcaaacccacacatctat 149  Q
    | |||||||| ||||| || ||||||||    
T  28711771 ataagttaggccaaactcatacatctat 28711798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 25 - 147
Target Start/End: Original strand, 20954184 - 20954305
Alignment:
Q  25 gtatgagtataattgttgggatgtaggataatattttcttttattatgtaggtctaaatcaaacacttattatttgacaaaagtaaagagtaaatggaca 124  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||| ||| ||||||||||||||| ||||||||||| |||| | |||||||| |    
T  20954184 gtatgagtataattgttgggatgtaagataatattttcttttgttatgta-gtccaaatcaaacacttataatttgacaaaaataaataataaatggata 20954282  T
Q  125 agttaggtcaaacccacacatct 147  Q
    ||| ||| |||||||||||||||    
T  20954283 agtaaggccaaacccacacatct 20954305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 15 - 106
Target Start/End: Complemental strand, 47953500 - 47953409
Alignment:
Q  15 atttataagggtatgagtataattgttgggatgtaggataatattttcttttattatgtaggtctaaatcaaacacttattatttgacaaaa 106  Q
    |||| ||||||||| ||||||||||||||||||||| ||||||||||||||| ||| |||||  ||||||||||||||||||||||||||||    
T  47953500 atttgtaagggtataagtataattgttgggatgtagtataatattttcttttgttacgtagggttaaatcaaacacttattatttgacaaaa 47953409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 7e-37; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 15 - 144
Target Start/End: Complemental strand, 34985599 - 34985472
Alignment:
Q  15 atttataagggtatgagtataattgttgggatgtaggataatattttcttttattatgtaggtctaaatcaaacacttattatttgacaaaagtaaagag 114  Q
    ||||||| |||||||||||||||||||||||| ||||||||| ||||||||| ||||||  |||||||||||||||||||||||||||||||  | ||||    
T  34985599 atttataggggtatgagtataattgttgggatataggataatgttttcttttgttatgttagtctaaatcaaacacttattatttgacaaaa--atagag 34985502  T
Q  115 taaatggacaagttaggtcaaacccacaca 144  Q
    |||||| | |||||||||| ||||||||||    
T  34985501 taaatgaagaagttaggtccaacccacaca 34985472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 25 - 149
Target Start/End: Original strand, 12822362 - 12822487
Alignment:
Q  25 gtatgagtataattgttgggatgtaggataatattttcttttattatgtaggtctaaatcaaacacttattatttgacaaaagtaaagagtaaatggaca 124  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||||||  ||||||||||||||||||||||||||| |||| | ||||| ||||    
T  12822362 gtatgagtataattgttgggatgtaagataatattttcttttgttatgtaggttcaaatcaaacacttattatttgacaaaaataaaaaataaattgaca 12822461  T
Q  125 agttaggtcaaa-cccacacatctat 149  Q
    ||||||| |||| | |||||||||||    
T  12822462 agttaggccaaatctcacacatctat 12822487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 23 - 149
Target Start/End: Complemental strand, 27779363 - 27779237
Alignment:
Q  23 gggtatgagtataattgttgggatgtaggataatattttcttttattatgtaggtctaaatcaaacacttattatttgacaaaagtaaagagtaaatgga 122  Q
    |||||||||||||||| || |||||||||||||||||||||||| ||||||| ||  |||||||||| |||||||||||||||| |||| |||||  |||    
T  27779363 gggtatgagtataatttttaggatgtaggataatattttcttttgttatgtatgttcaaatcaaacatttattatttgacaaaaataaaaagtaacggga 27779264  T
Q  123 caagttaggtcaaacccacacatctat 149  Q
    ||||||||| |||||| ||||||||||    
T  27779263 caagttaggccaaacctacacatctat 27779237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 325
Target Start/End: Original strand, 10031017 - 10031051
Alignment:
Q  291 ccaacaacgttaaaactcttaggaagagcttgccg 325  Q
    ||||||||||||||||||||||| |||||||||||    
T  10031017 ccaacaacgttaaaactcttagggagagcttgccg 10031051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 34 - 149
Target Start/End: Complemental strand, 2671 - 2556
Alignment:
Q  34 taattgttgggatgtaggataatattttcttttattatgtaggtctaaatcaaacacttattatttgacaaaagtaaagagtaaatggacaagttaggtc 133  Q
    |||||||||||||||| |||||||||||||||| ||||| | ||  |||||||||| |||||||||||||||| ||||||||||||||| |||||| | |    
T  2671 taattgttgggatgtaagataatattttcttttgttatgcaagttcaaatcaaacatttattatttgacaaaaataaagagtaaatggataagttaagcc 2572  T
Q  134 aaacccacacatctat 149  Q
    ||||||||||||||||    
T  2571 aaacccacacatctat 2556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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