View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2312_low_5 (Length: 663)
Name: NF2312_low_5
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 567; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 10 - 647
Target Start/End: Complemental strand, 28962551 - 28961911
Alignment:
| Q |
10 |
catcatcaccacaaaaaccgccattgttacgaaatggttctgctttcacaatccttgcagtccaagtgccacttttctttagatgtggcttctttgtttt |
109 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28962551 |
catcaccaccacaaaaaccgccattgttacgaaatggttctgctttcacaatccttgcagtccaagtgccacttttcttcagatgtggcttctttgtttt |
28962452 |
T |
|
| Q |
110 |
ctcctgtgcttccattattgctttccatgttgcttctaaactgtcatcatcacctttatcacctgagtccggcaagttataatcgttgcaacatttttcc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28962451 |
ctcctgtgcttccattattgctttccatgttgcttctaaactgtcatcatcacctttatcacctgagtccggcaagttataatcgttgcaacatttttcc |
28962352 |
T |
|
| Q |
210 |
ggtgatggatcatcgatgaatttgttgcagaataatctgaagtctttaactttgtcgtcagaatctggcaagtaaaagtccttgctgcatttttccggaa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28962351 |
ggtgatggatcatcgatgaatttgttgcagaataatctgaagtctttaactttgtcgtcagaatctggcaagtaaaagtccttgctgcatttttccggaa |
28962252 |
T |
|
| Q |
310 |
tcggatcagtgatgaatttgttgtggaacaattcagagtctttaataacccttttctcttcttgt------tcttcaacttcttcaacnnnnnnnncttc |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
28962251 |
tcggatcagtgatgaatttgttgtggaacaattcagagtctttaacaacccttttctcttcttgttcttgttcttcaacttcttcaacttttttttcttc |
28962152 |
T |
|
| Q |
404 |
ttgatgtggttcattggtttggttttctagctcaattgggttggtggtagtttctaaaatgcttgttgttgttgtgtgttttggatcagaaaagcttgaa |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
28962151 |
ttgatgtggttcattggtttggttttctagctcaattgggttggtggtagtttctaaaatgc---ttgttgttgtgtgttttggatcagaaaagcttgaa |
28962055 |
T |
|
| Q |
504 |
gaagctacaatgataataatgatgaagttaacaatgatgtaaaggaaaggaagtgtaaaccatgttcttattgagaaccaaagttgaggaagagttgaaa |
603 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28962054 |
gaagctacaatgataataatgatgaagttaacaatgatgtaaaggaaaggaagtgtaaaccatgttcttattgagaaccaaagttgaggaagagttgaaa |
28961955 |
T |
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| Q |
604 |
gaacaagatcaaatgtgtatggaattattgcaactttgaacaaa |
647 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
28961954 |
gaacaagatcaaatgtgtacggaattattgcaactttgaacaaa |
28961911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 25 - 473
Target Start/End: Complemental strand, 29002259 - 29001796
Alignment:
| Q |
25 |
aaccgccattgttacgaaatggttctgctttcacaatccttgcagtccaagtgccacttttctttagatgtggcttctttgttttctcctgtgcttccat |
124 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||| ||||||| |
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| T |
29002259 |
aaccaccattgttacgaaatggttcggctttcacaatccttgcagtccaagtgtcacttttctttagatatggcttctttgttttctcttgtccttccat |
29002160 |
T |
|
| Q |
125 |
tattgctttccatgttgcttctaaactgtcatcatcacctttatcacctgagtccggcaagttataatcgttgcaacatttttccggtgatggatcatcg |
224 |
Q |
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||| ||||||||||||||||| ||||||||||||||||||||||| || || ||||| |||||||||||||||| | ||||||| || ||||||| | |
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| T |
29002159 |
tatagctttccatgttgcttccaaactgtcatcatcacctttatcgccggaatccggggagttataatcgttgcagcgtttttcctgtattggatcagtg |
29002060 |
T |
|
| Q |
225 |
atgaatttgttgcagaataatctgaagtctttaactttgtcgtcagaatctggcaagtaaaag---tccttgctgcatttttccggaatcggatcagtga |
321 |
Q |
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|||||||||||| |||| ||| |||||||||||||| || |||||||||| |||| || || |||||||||||||||| | | || | ||||| |
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| T |
29002059 |
atgaatttgttgaagaacaattcaaagtctttaactttatcatcagaatctgtcaaggaatagtcctccttgctgcattttttctgtgatgggtgagtga |
29001960 |
T |
|
| Q |
322 |
tgaatttgttgtggaacaattcagagtcttt------aataacccttttctc------ttcttgttcttcaacttcttcaacnnnnnnnncttcttgatg |
409 |
Q |
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|||||| || |||||||||||||||||| || ||| |||||||| |||||||||||||| ||||||||| |||||||||| |
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| T |
29001959 |
tgaattcgtcacagaacaattcagagtctttgacatcaacaactcttttctcatcttgttcttgttcttcaatttcttcaaccactttttcttcttgatg |
29001860 |
T |
|
| Q |
410 |
tggttcattggtttggttttctagctcaattgggttggtggtagtttctaaaatgcttgttgtt |
473 |
Q |
| |
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|||||||||||||||||||||| |||||||||| ||||||||||||||||||||| | |||||| |
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| T |
29001859 |
tggttcattggtttggttttcttgctcaattggattggtggtagtttctaaaatggtggttgtt |
29001796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 499 - 647
Target Start/End: Complemental strand, 29001746 - 29001598
Alignment:
| Q |
499 |
ttgaagaagctacaatgataataatgatgaagttaacaatgatgtaaaggaaaggaagtgtaaaccatgttcttattgagaaccaaagttgaggaagagt |
598 |
Q |
| |
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|||||||| ||||||| |||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
29001746 |
ttgaagaaaatacaatggtaatgatgatgaagttaacaatgatgtaaaggaaagggattgtaaaccatgttcttattgagaaccaaagttgaggaagagt |
29001647 |
T |
|
| Q |
599 |
tgaaagaacaagatcaaatgtgtatggaattattgcaactttgaacaaa |
647 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29001646 |
tgaaagaacaagatcaaatgtgtatggaattattgcaactttgaacaaa |
29001598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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