View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2312_low_55 (Length: 300)

Name: NF2312_low_55
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2312_low_55
NF2312_low_55
[»] chr8 (1 HSPs)
chr8 (18-111)||(29023108-29023203)
[»] chr2 (2 HSPs)
chr2 (65-111)||(23358127-23358173)
chr2 (244-286)||(23357951-23357993)
[»] chr1 (1 HSPs)
chr1 (65-111)||(291903-291949)
[»] chr5 (2 HSPs)
chr5 (66-111)||(41740784-41740829)
chr5 (18-54)||(41740735-41740771)


Alignment Details
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 29023203 - 29023108
Alignment:
Q  18 caaacgcccctaaatatagaatttcttatattttgtc--nnnnnnnnnncaattatatcacatttgccaaagctgtattttttaatgtgtagtgat 111  Q
    ||||| |||||||| ||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||| ||||||||||    
T  29023203 caaacacccctaaaaatagaatttcttatattttgtcaaaaaaaaaaaacaattatatcacatttgccaaagctgtattttttaacgtgtagtgat 29023108  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 111
Target Start/End: Complemental strand, 23358173 - 23358127
Alignment:
Q  65 caattatatcacatttgccaaagctgtattttttaatgtgtagtgat 111  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||    
T  23358173 caattatatcacatttaccaaagctgtattttttaacgtgtagtgat 23358127  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 286
Target Start/End: Complemental strand, 23357993 - 23357951
Alignment:
Q  244 ctcagtttctgcatattccttccatttttccacaaccttcttc 286  Q
    ||||||||| |||||| |||||||||| |||||||||||||||    
T  23357993 ctcagtttcggcatatcccttccatttctccacaaccttcttc 23357951  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 111
Target Start/End: Original strand, 291903 - 291949
Alignment:
Q  65 caattatatcacatttgccaaagctgtattttttaatgtgtagtgat 111  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||    
T  291903 caattatatcacatttgccaaagctgtattttttaacctgtagtgat 291949  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 111
Target Start/End: Original strand, 41740784 - 41740829
Alignment:
Q  66 aattatatcacatttgccaaagctgtattttttaatgtgtagtgat 111  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||    
T  41740784 aattatatcacatttgtcaaagctgtattttttaacgtgtagtgat 41740829  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 41740735 - 41740771
Alignment:
Q  18 caaacgcccctaaatatagaatttcttatattttgtc 54  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  41740735 caaacacccctaaacatagaatttcttatattttgtc 41740771  T

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